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H2-16-all-fractions_k255_9145396

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
H2-16-all-fractions_k255_9145396_1
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13..978)
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000364ADE5
Putative Flp pilus assembly protein {ECO:0000313|EMBL:GAO39656.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
pilus assembly protein TadB
H2-16-all-fractions_k255_9145396_2
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1041..2309)
DNA (1269bp) protein (423aa)
pilus assembly protein CpaE n=1 Tax=Sphingomonas sp. KC8 RepID=UPI00024897F9
Flp pilus assembly protein ATPase CpaE
Flp pilus assembly protein ATPase CpaE {ECO:0000313|EMBL:AGH49222.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
H2-16-all-fractions_k255_9145396_3
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2309..2935)
DNA (627bp) protein (209aa)
Pilus assembly protein CpaD n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IMZ1_9SPHN
pilus assembly protein CpaD
Pilus assembly protein CpaD {ECO:0000313|EMBL:CCA92793.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
H2-16-all-fractions_k255_9145396_4
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2965..4449)
DNA (1485bp) protein (495aa)
Type II and III secretion system protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RZP0_9SPHN
type II and III secretion system protein
Type II and III secretion system protein {ECO:0000313|EMBL:AGH49220.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
H2-16-all-fractions_k255_9145396_5
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4451..5488)
DNA (1038bp) protein (346aa)
Flp pilus assembly protein CpaB n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S409_9SPHN
Flp pilus assembly protein CpaB
Flp pilus assembly protein CpaB {ECO:0000313|EMBL:AGH49219.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
H2-16-all-fractions_k255_9145396_6
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5535..6008)
DNA (474bp) protein (158aa)
UPI0003D627B5 related cluster n=1 Tax=unknown RepID=UPI0003D627B5
Peptidase {ECO:0000313|EMBL:ETI64854.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
peptidase A24A prepilin type IV
H2-16-all-fractions_k255_9145396_7
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6059..7162
DNA (1104bp) protein (368aa)
FAD-dependent oxidoreductase n=1 Tax=Sphingobium xenophagum RepID=UPI00036E28D1
Uncharacterized protein {ECO:0000313|EMBL:AHE52689.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
FAD-dependent oxidoreductase
H2-16-all-fractions_k255_9145396_8
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7159..7545)
DNA (387bp) protein (129aa)
Inner membrane protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I6C7_RHOVT
inner membrane protein
Tax=RBG_16_Gamma2_60_9_curated
H2-16-all-fractions_k255_9145396_9
Roseovarius sp. BRH_c41, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7687..8775)
DNA (1089bp) protein (363aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002F9C670
Nucleoside-diphosphate sugar epimerase {ECO:0000313|EMBL:KJS42036.1}; TaxID=1629709 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. BRH_c41.;"
hypothetical protein
H2-16-all-fractions_k255_9145396_10
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8726..9151)
DNA (426bp) protein (142aa)
rnhA; ribonuclease HI (EC:3.1.26.4)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
Ribonuclease H n=3 Tax=Sphingobium RepID=D4Z4X1_SPHJU
H2-16-all-fractions_k255_9145396_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9159..10127)
DNA (969bp) protein (323aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037A99E7
4-hydroxy-3-methylbut-2-enyl diphosphate reductase
H2-16-all-fractions_k255_9145396_12
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10204..10845
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036243E3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI97650.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
H2-16-all-fractions_k255_9145396_13
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11157..12284
DNA (1128bp) protein (376aa)
gcvT; glycine cleavage system aminomethyltransferase T (EC:2.1.2.10)
Aminomethyltransferase {ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|RuleBase:RU003981};; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
Aminomethyltransferase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RWU3_9SPHN
H2-16-all-fractions_k255_9145396_14
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12284..12655
DNA (372bp) protein (124aa)
glycine cleavage system protein H n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0002F6CEEA
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
glycine cleavage system protein H
H2-16-all-fractions_k255_9145396_15
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12661..13107
DNA (447bp) protein (149aa)
Tax=GWF1_Sphingomonadales_63_6_curated
H2-16-all-fractions_k255_9145396_16
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13104..13853
DNA (750bp) protein (250aa)
trans-aconitate methyltransferase n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036E5042
methyltransferase
Methyltransferase {ECO:0000313|EMBL:AGH47999.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
H2-16-all-fractions_k255_9145396_17
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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13853..15211
DNA (1359bp) protein (453aa)
Probable glycine dehydrogenase (decarboxylating) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00015358}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00022796};; Glycine cleavage system P-protein subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine decarboxylase subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine dehydrogenase (aminomethyl-transferring) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
Probable glycine dehydrogenase [decarboxylating] subunit 1 n=1 Tax=Sphingomonas sp. S17 RepID=F3X249_9SPHN
glycine dehydrogenase
H2-16-all-fractions_k255_9145396_18
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15208..16776
DNA (1569bp) protein (523aa)
Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|SAAS:SAAS00022796}; EC=1.4.4.2 {ECO:0000256|SAAS:SAAS00022796};; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
glycine dehydrogenase subunit 2 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4ECB8
glycine dehydrogenase subunit 2
H2-16-all-fractions_k255_9145396_19
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16789..17298
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B5EC2A
Uncharacterized protein {ECO:0000313|EMBL:EZP57378.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
H2-16-all-fractions_k255_9145396_20
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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17295..17930
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI0002ECD804
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF53578.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
H2-16-all-fractions_k255_9145396_21
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17927..18580)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RZ88_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH49050.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
H2-16-all-fractions_k255_9145396_22
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18761..19741
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S090_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE56798.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
H2-16-all-fractions_k255_9145396_23
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20439..21368
DNA (930bp) protein (310aa)
endonuclease n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037D0022
Phage-related protein, predicted endonuclease {ECO:0000313|EMBL:EHR04603.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
hypothetical protein
H2-16-all-fractions_k255_9145396_24
Escherichia hermannii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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21365..22108
DNA (744bp) protein (248aa)
Putative uncharacterized protein n=1 Tax=Escherichia hermannii NBRC 105704 RepID=H5UWI9_ESCHE
Putative uncharacterized protein {ECO:0000313|EMBL:GAB50270.1}; TaxID=1115512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia hermannii NBRC 105704.;"
H2-16-all-fractions_k255_9145396_25
Streptomyces sp. NRRL S-104, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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22783..23172
DNA (390bp) protein (130aa)
Dihydrolipoamide acetyltransferase {ECO:0000313|EMBL:KJY21128.1}; TaxID=1609135 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. NRRL S-104.;"
H2-16-all-fractions_k255_9145396_26
unknown

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23220..23624
DNA (405bp) protein (135aa)

This feature has no annotations

H2-16-all-fractions_k255_9145396_27
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(23661..24434)
DNA (774bp) protein (258aa)
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
surE; 5'(3')-nucleotidase/polyphosphatase (EC:3.6.1.11)
5'-nucleotidase SurE n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S8D3_9SPHN
H2-16-all-fractions_k255_9145396_28
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24726..25193
DNA (468bp) protein (156aa)
molecular chaperone DnaK n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B5CD9C
TraR/DksA family transcriptional regulator
RNA polymerase-binding transcription factor DksA {ECO:0000256|HAMAP-Rule:MF_00926}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
H2-16-all-fractions_k255_9145396_29
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25572..26141)
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI00024885D0
Uncharacterized protein {ECO:0000313|EMBL:GAO40680.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
H2-16-all-fractions_k255_9145396_30
unknown

Not on your lists

26498..26719
DNA (222bp) protein (74aa)

This feature has no annotations

Displaying 30 items

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