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H2-16-all-fractions_k255_2956340

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
H2-16-all-fractions_k255_2956340_1
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..1681
DNA (1680bp) protein (560aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
arginyl-tRNA synthetase n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034A05B2
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
H2-16-all-fractions_k255_2956340_2
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1697..2398
DNA (702bp) protein (234aa)
membrane protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034D1853
Cell division protein {ECO:0000313|EMBL:GAD21845.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
transmembrane protein
H2-16-all-fractions_k255_2956340_3
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2457..3113
DNA (657bp) protein (219aa)
dsbA; thiol:disulfide interchange protein DsbA (EC:5.3.4.1)
Thiol:disulfide interchange protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WVR0_9BURK
Thiol:disulfide interchange protein {ECO:0000256|PIRNR:PIRNR001488}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
H2-16-all-fractions_k255_2956340_4
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3288..3962
DNA (675bp) protein (225aa)
Lipopolysaccharide transport periplasmic protein LptA n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WVQ9_9BURK
Lipopolysaccharide export system protein LptA {ECO:0000256|HAMAP-Rule:MF_01914}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
lptA; putative lipopolysaccharide transport protein A LptA
H2-16-all-fractions_k255_2956340_5
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3959..4819
DNA (861bp) protein (287aa)
Putative ATP-binding ABC transporter protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SC22_METPP
ATP-binding ABC transporter protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
H2-16-all-fractions_k255_2956340_6
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4842..6401
DNA (1560bp) protein (520aa)
RNA polymerase subunit sigma-54 n=1 Tax=Ideonella sp. B508-1 RepID=UPI000344E959
rpoN; RNA polymerase sigma-54 factor RpoN
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
H2-16-all-fractions_k255_2956340_7
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6462..7877
DNA (1416bp) protein (472aa)
Putative RNA methylase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XYJ5_LEPCP
putative RNA methylase
Putative RNA methylase {ECO:0000313|EMBL:ACB36431.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
H2-16-all-fractions_k255_2956340_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8004..8474
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI0003812A38
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS19935.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
H2-16-all-fractions_k255_2956340_9
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8498..9250)
DNA (753bp) protein (251aa)
rsmE; ribosomal RNA small subunit methyltransferase E RsmE (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HY55_RUBGI
H2-16-all-fractions_k255_2956340_10
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9326..10018)
DNA (693bp) protein (231aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase (EC:3.2.2.9)
S-adenosylhomocysteine nucleosidase n=1 Tax=Ideonella sp. B508-1 RepID=UPI000344E2F3
H2-16-all-fractions_k255_2956340_11
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10041..10526)
DNA (486bp) protein (162aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WVQ3_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHR69696.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
proline-rich protein
H2-16-all-fractions_k255_2956340_12
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10688..12361)
DNA (1674bp) protein (558aa)
fadD; long-chain-fatty-acid-CoA ligase FadD (EC:6.2.1.3)
Long-chain-fatty-acid-CoA ligase FadD n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HY57_RUBGI
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
H2-16-all-fractions_k255_2956340_13
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12472..13896)
DNA (1425bp) protein (475aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
pntB; NAD(P) transhydrogenase, beta subunit PntB (EC:1.6.1.2)
NAD(P) transhydrogenase subunit beta n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LSI8_9BURK
H2-16-all-fractions_k255_2956340_14
unknown

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comp(13893..14138)
DNA (246bp) protein (82aa)

This feature has no annotations

H2-16-all-fractions_k255_2956340_15
Bordetella holmesii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14135..14464)
DNA (330bp) protein (110aa)
NAD(P) transhydrogenase subunit alpha n=2 Tax=Bordetella holmesii RepID=M5P113_9BORD
hypothetical protein
PF12769 domain protein {ECO:0000313|EMBL:KAK76861.1}; TaxID=1331212 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella holmesii CDC-H809-BH.;"
H2-16-all-fractions_k255_2956340_16
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14529..15659)
DNA (1131bp) protein (377aa)
pntAA; NAD(P) transhydrogenase, alpha subunit part 1 PntAA (EC:1.6.1.2)
NAD(P) transhydrogenase subunit alpha n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LSJ0_9BURK
NAD(P)(+) transhydrogenase {ECO:0000313|EMBL:EGJ11308.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
H2-16-all-fractions_k255_2956340_17
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15937..16413
DNA (477bp) protein (159aa)
NUDIX hydrolase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LSJ1_9BURK
NUDIX hydrolase {ECO:0000313|EMBL:EGJ11309.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
hypothetical protein
H2-16-all-fractions_k255_2956340_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16461..17582
DNA (1122bp) protein (374aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GAZ2_ALIDK
tRNA-specific 2-thiouridylase mnmA
H2-16-all-fractions_k255_2956340_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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17827..18195
DNA (369bp) protein (123aa)
Putative membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WSS5_9GAMM
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AGG87797.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
H2-16-all-fractions_k255_2956340_20
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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18293..19240
DNA (948bp) protein (316aa)
CysB family transcriptional regulator n=1 Tax=Ideonella sp. B508-1 RepID=UPI000349AAF5
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABM93089.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
H2-16-all-fractions_k255_2956340_21
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(19283..19786)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00036A5924
Uncharacterized protein {ECO:0000313|EMBL:CCH53306.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
hypothetical protein
H2-16-all-fractions_k255_2956340_22
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(19940..20938)
DNA (999bp) protein (333aa)
Sulfate/thiosulfate import ATP-binding protein CysA {ECO:0000256|HAMAP-Rule:MF_01701}; EC=3.6.3.25 {ECO:0000256|HAMAP-Rule:MF_01701};; Sulfate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01701}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
cysA; ABC type ATPase (EC:3.6.3.25)
Sulfate ABC transporter, ATP-binding protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WRJ4_9BURK
H2-16-all-fractions_k255_2956340_23
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(20928..21860)
DNA (933bp) protein (311aa)
sulfate ABC transporter permease n=1 Tax=Ideonella sp. B508-1 RepID=UPI000346FFCD
sulfate ABC transporter permease
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
H2-16-all-fractions_k255_2956340_24
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21927..22760)
DNA (834bp) protein (278aa)
Sulfate ABC transporter, inner membrane subunit CysT n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y6N1_LEPCP
sulfate ABC transporter permease
Sulfate ABC transporter, inner membrane subunit CysT {ECO:0000313|EMBL:ACB36059.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
H2-16-all-fractions_k255_2956340_25
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23032..23235)
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003489F31
Putative uncharacterized protein {ECO:0000313|EMBL:EHR73705.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
H2-16-all-fractions_k255_2956340_26
Aquabacterium sp. NJ1, Aquabacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23545..24189)
DNA (645bp) protein (215aa)
LuxR family transcriptional regulator n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003B68053
Uncharacterized protein {ECO:0000313|EMBL:KGM39210.1}; TaxID=1538295 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Aquabacterium.;" source="Aquabacterium sp. NJ1.;"
dctR; C4-dicarboxylate transport transcriptional regulator, LuxR/FixJ family
H2-16-all-fractions_k255_2956340_27
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24186..26210)
DNA (2025bp) protein (675aa)
cytochrome C biogenesis protein CcmE n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003B3DB37
PAS/PAC sensor signal transduction histidine kinase
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
H2-16-all-fractions_k255_2956340_28
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26405..27418
DNA (1014bp) protein (338aa)
hypothetical protein n=1 Tax=Uliginosibacterium gangwonense RepID=UPI00036DC3C6
C4-dicarboxylate-binding periplasmic protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
H2-16-all-fractions_k255_2956340_29
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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27572..28219
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI0003645CFE
tripartite ATP-independent periplasmic transporter DctQ
Tax=GWA2_Rhodocyclales_65_20_curated
H2-16-all-fractions_k255_2956340_30
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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28216..28785
DNA (570bp) protein (190aa)
C4-dicarboxylate ABC transporter permease n=1 Tax=Pseudogulbenkiania ferrooxidans EGD-HP2 RepID=U1BZD2_9NEIS
C4-dicarboxylate ABC transporter permease {ECO:0000313|EMBL:ERE20333.1}; TaxID=1388764 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans EGD-HP2.;"
C4-dicarboxylate transporter large subunit
Displaying 30 items

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