ggKbase home page

H2-16-all-fractions_k255_4762466

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
H2-16-all-fractions_k255_4762466_1
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..387)
DNA (387bp) protein (129aa)
Entner-Doudoroff aldolase n=1 Tax=Acidovorax sp. CF316 RepID=J0KGS9_9BURK
Entner-Doudoroff aldolase {ECO:0000313|EMBL:EJE52850.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
2-dehydro-3-deoxyphosphogluconate aldolase
H2-16-all-fractions_k255_4762466_2
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(410..2260)
DNA (1851bp) protein (617aa)
phosphogluconate dehydratase (EC:4.2.1.12)
6-phosphogluconate dehydratase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WLD3_9BURK
6-phosphogluconate dehydratase {ECO:0000313|EMBL:EHR70454.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
H2-16-all-fractions_k255_4762466_3
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2402..3022)
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI000369BF12
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
H2-16-all-fractions_k255_4762466_4
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3139..3783
DNA (645bp) protein (215aa)
pdxH; pyridoxine/pyridoxamine 5'-phosphate oxidase PdxH (EC:1.4.3.5)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUV2_RUBGI
H2-16-all-fractions_k255_4762466_5
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3904..4734
DNA (831bp) protein (277aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WLC3_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHR70444.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
H2-16-all-fractions_k255_4762466_6
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4957..6534)
DNA (1578bp) protein (526aa)
ubiD; 3-polyprenyl-4-hydroxybenzoate decarboxylase UbiD (EC:4.1.1.-)
3-polyprenyl-4-hydroxybenzoate decarboxylase-like protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WLC2_9BURK
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
H2-16-all-fractions_k255_4762466_7
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6789..7733
DNA (945bp) protein (315aa)
Putative lytic transglycosylase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HW44_RUBGI
putative lytic transglycosylase
Putative lytic transglycosylase {ECO:0000313|EMBL:BAL97231.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
H2-16-all-fractions_k255_4762466_8
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8139..9386
DNA (1248bp) protein (416aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
glyA; serine hydroxymethyltransferase GlyA (EC:2.1.2.1)
serine hydroxymethyltransferase n=1 Tax=Ideonella sp. B508-1 RepID=UPI000344974D
H2-16-all-fractions_k255_4762466_9
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9405..9848
DNA (444bp) protein (148aa)
NrdR family transcriptional regulator n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003480F5F
nrdR; transcriptional regulator NrdR
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
H2-16-all-fractions_k255_4762466_10
unknown

Not on your lists

9900..10100
DNA (201bp) protein (67aa)

This feature has no annotations

H2-16-all-fractions_k255_4762466_11
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10110..10577)
DNA (468bp) protein (156aa)
Fimbrial protein pilin n=1 Tax=Pseudomonas pseudoalcaligenes CECT 5344 RepID=I7K5N8_PSEPS
fimbrial protein pilin
Fimbrial protein pilin {ECO:0000313|EMBL:CDM41975.1}; TaxID=1182590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes CECT 5344.;"
H2-16-all-fractions_k255_4762466_12
Aquabacterium sp. NJ1, Aquabacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10614..11171)
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003B3EEB9
Uncharacterized protein {ECO:0000313|EMBL:KGM39822.1}; TaxID=1538295 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Aquabacterium.;" source="Aquabacterium sp. NJ1.;"
H2-16-all-fractions_k255_4762466_13
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11273..12172)
DNA (900bp) protein (300aa)
Tfp pilus assembly protein PilW n=1 Tax=Variovorax sp. CF313 RepID=J3CDJ4_9BURK
Tfp pilus assembly protein PilW-like protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
H2-16-all-fractions_k255_4762466_14
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12169..12783)
DNA (615bp) protein (205aa)
Type IV pilus modification protein PilV n=1 Tax=Variovorax sp. CF313 RepID=J2K8D6_9BURK
type IV pilus modification protein PilV
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
H2-16-all-fractions_k255_4762466_15
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12774..13382)
DNA (609bp) protein (203aa)
Putative uncharacterized protein n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IUE5_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EGW21555.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
general secretion pathway protein H
H2-16-all-fractions_k255_4762466_16
Nitrosomonas sp. AL212, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13677..14240)
DNA (564bp) protein (188aa)
type IV fimbrial biogenesis protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI000345B7D1
General secretion pathway, GspH
General secretion pathway, GspH {ECO:0000313|EMBL:ADZ27685.1}; TaxID=153948 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. AL212.;"
H2-16-all-fractions_k255_4762466_17
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14369..15466
DNA (1098bp) protein (366aa)
ribD; riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26)
diaminohydroxyphosphoribosylaminopyrimidine deaminase n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003B3BA97
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
H2-16-all-fractions_k255_4762466_18
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15522..16628
DNA (1107bp) protein (369aa)
ribBA; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein RibB/RibA (EC:3.5.4.25 4.1.99.12)
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00180}; Short=DHBP synthase {ECO:0000256|HAMAP-Rule:MF_00180};; EC=4.1.99.12 {ECO:0000256|HAMAP-Rule:MF_00180};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Ideonella sp. B508-1 RepID=UPI000348F6E0
H2-16-all-fractions_k255_4762466_19
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16776..17240
DNA (465bp) protein (155aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003484B6F
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
H2-16-all-fractions_k255_4762466_20
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17237..17731
DNA (495bp) protein (165aa)
N utilization substance protein B homolog n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WLA9_9BURK
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
N utilization substance B
H2-16-all-fractions_k255_4762466_21
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17728..18912
DNA (1185bp) protein (395aa)
aspartate transaminase (EC:2.6.1.1)
Aminotransferase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LNU6_9BURK
Aminotransferase {ECO:0000313|EMBL:EGJ10014.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
H2-16-all-fractions_k255_4762466_22
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19036..20775
DNA (1740bp) protein (580aa)
serine/threonine protein kinase-like protein (EC:2.7.11.1)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI000371AB2A
Protein kinase family protein {ECO:0000313|EMBL:EHR70428.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
H2-16-all-fractions_k255_4762466_23
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20796..21215
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI0003665374
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM95905.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
H2-16-all-fractions_k255_4762466_24
Curvibacter putative symbiont of Hydra magnipapillata, Curvibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21376..21798
DNA (423bp) protein (141aa)
ybgC; tol-pal system-associated acyl-CoA thioesterase (EC:3.1.2.-)
Uncharacterized protein HI0386 n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YB48_9BURK
Uncharacterized protein HI0386 {ECO:0000313|EMBL:CBA29707.1}; TaxID=667019 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Curvibacter.;" source="Curvibacter putative symbiont of Hydra magnipapillata.;"
H2-16-all-fractions_k255_4762466_25
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21795..22487
DNA (693bp) protein (231aa)
TolQ protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WLA5_9BURK
TolQ protein {ECO:0000313|EMBL:EHR70426.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
tolQ; biopolymer transport protein, TolQ
H2-16-all-fractions_k255_4762466_26
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22494..22916
DNA (423bp) protein (141aa)
Biopolymer transport protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WLA4_9BURK
Biopolymer transport protein {ECO:0000313|EMBL:EHR70425.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
tolR; biopolymer transport protein TolR
H2-16-all-fractions_k255_4762466_27
Candidatus Symbiobacter mobilis, Candidatus Symbiobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22927..23706
DNA (780bp) protein (260aa)
TolA-like protein n=1 Tax=Candidatus Symbiobacter mobilis CR RepID=U5N840_9BURK
TolA-like protein
TolA-like protein {ECO:0000313|EMBL:AGX87475.1}; TaxID=946483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Candidatus Symbiobacter mobilis CR.;"
H2-16-all-fractions_k255_4762466_28
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23714..23980)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PNG9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:ELX13112.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
signal peptide protein
H2-16-all-fractions_k255_4762466_29
Marinobacterium sp. AK27, Marinobacterium, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24172..26415
DNA (2244bp) protein (748aa)
Putative diguanylate cyclase/phosphodiesterase with GAF domain n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z835_AZOL4
Diguanylate cyclase {ECO:0000313|EMBL:KEA62289.1}; TaxID=1232683 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacterium.;" source="Marinobacterium sp. AK27.;"
putative diguanylate cyclase/phosphodiesterase with GAF domain
H2-16-all-fractions_k255_4762466_30
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26499..27080
DNA (582bp) protein (194aa)
RNA polymerase sigma factor n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034CAB5E
RNA polymerase sigma factor {ECO:0000313|EMBL:KDB53255.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
RNA polymerase sigma factor
Displaying items 1-30 of 37 in total

View Taxonomy