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H2-16-all-fractions_k255_4825555

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Displaying items 1-30 of 33 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
H2-16-all-fractions_k255_4825555_1
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..508)
DNA (507bp) protein (169aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29)
peptidyl-tRNA hydrolase n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003495855
H2-16-all-fractions_k255_4825555_2
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(516..1487)
DNA (972bp) protein (324aa)
Ribosomal-protein-alanine acetyltransferase n=3 Tax=Bacillus cereus RepID=R8P6Q7_BACCE
Uncharacterized protein {ECO:0000313|EMBL:EZH75472.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
acetyltransferase
H2-16-all-fractions_k255_4825555_3
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1546..2502)
DNA (957bp) protein (319aa)
LysR family transcriptional regulator n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034A97C7
Transcriptional regulator, ArgP family {ECO:0000313|EMBL:EHR73243.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
chromosome replication initiation inhibitor protein
H2-16-all-fractions_k255_4825555_4
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2605..3720
DNA (1116bp) protein (372aa)
Alanine dehydrogenase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21R51_RHOFD
alanine dehydrogenase
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
H2-16-all-fractions_k255_4825555_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3789..4634
DNA (846bp) protein (282aa)
psd; phosphatidylserine decarboxylase proenzyme (EC:4.1.1.65)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00662, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00662, ECO:0000256|SAAS:SAAS00093350};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Phosphatidylserine decarboxylase proenzyme n=1 Tax=Variovorax sp. CF313 RepID=J2KE71_9BURK
H2-16-all-fractions_k255_4825555_6
unknown

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comp(4622..4927)
DNA (306bp) protein (102aa)

This feature has no annotations

H2-16-all-fractions_k255_4825555_7
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5106..5807)
DNA (702bp) protein (234aa)
50S ribosomal protein L25 n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQ23_9BURK
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
rplY; 50S ribosomal protein L25
H2-16-all-fractions_k255_4825555_8
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5913..6875)
DNA (963bp) protein (321aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
prs; ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
ribose-phosphate pyrophosphokinase n=1 Tax=Ideonella sp. B508-1 RepID=UPI000348A805
H2-16-all-fractions_k255_4825555_9
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7094..7975)
DNA (882bp) protein (294aa)
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HMH6_RUBGI
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
H2-16-all-fractions_k255_4825555_10
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7987..8577)
DNA (591bp) protein (197aa)
Outer membrane lipoprotein involved in outer membrane biogenesis n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQ20_9BURK
Outer-membrane lipoprotein LolB {ECO:0000256|SAAS:SAAS00002103}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
H2-16-all-fractions_k255_4825555_11
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8574..10604)
DNA (2031bp) protein (677aa)
Flp pilus assembly protein TadD n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQ19_9BURK
Flp pilus assembly protein TadD {ECO:0000313|EMBL:EHR73238.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
H2-16-all-fractions_k255_4825555_12
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10648..11532
DNA (885bp) protein (295aa)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020852}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule:MF_00103};; DNA-(apurinic or apyrimidinic site) lyase MutM {ECO:0000256|HAMAP-Rule:MF_00103}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
mutM; formamidopyrimidine-DNA glycosylase/DNA-(apurinic or apyrimidinic site) lyase MutM (EC:3.2.2.23 4.2.99.18)
Formamidopyrimidine-DNA glycosylase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQ18_9BURK
H2-16-all-fractions_k255_4825555_13
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11797..13788
DNA (1992bp) protein (664aa)
dynamin family protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003B6AACD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM96187.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
H2-16-all-fractions_k255_4825555_14
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13833..15077
DNA (1245bp) protein (415aa)
mutY; A/G-specific adenine glycosylase (EC:3.2.2.-)
A/G-specific DNA-adenine glycosylase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LTT5_9BURK
A/G-specific DNA-adenine glycosylase {ECO:0000313|EMBL:EGJ11753.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
H2-16-all-fractions_k255_4825555_15
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15090..15617)
DNA (528bp) protein (176aa)
GNAT family acetyltransferase id=5079887 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
GNAT family acetyltransferase
Tax=GWE1_Burkholderiales_65_30_curated
H2-16-all-fractions_k255_4825555_16
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15614..16555)
DNA (942bp) protein (314aa)
glmZ(sRNA)-inactivating NTPase n=1 Tax=Ideonella sp. B508-1 RepID=UPI000347CAF8
hypothetical protein
Nucleotide-binding protein RGE_08790 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
H2-16-all-fractions_k255_4825555_17
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16591..18333)
DNA (1743bp) protein (581aa)
DNA repair protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI000346CF30
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
recN; DNA repair protein RecN
H2-16-all-fractions_k255_4825555_18
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18466..19338)
DNA (873bp) protein (291aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003454075
ppnK; NAD(+)/NADH kinase family protein
H2-16-all-fractions_k255_4825555_19
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19443..20480
DNA (1038bp) protein (346aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HMI6_RUBGI
hrcA; heat-inducible transcription repressor HrcA
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
H2-16-all-fractions_k255_4825555_20
unknown

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comp(20558..21100)
DNA (543bp) protein (181aa)

This feature has no annotations

H2-16-all-fractions_k255_4825555_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21459..22307)
DNA (849bp) protein (283aa)
ABC transporter substrate-binding protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034C95AF
extracellular solute-binding protein family 3
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:ACS22813.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
H2-16-all-fractions_k255_4825555_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22304..22804)
DNA (501bp) protein (167aa)
cytochrome C n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034C7D0B
putative cytochrome c
Putative cytochrome c {ECO:0000313|EMBL:AGU53411.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
H2-16-all-fractions_k255_4825555_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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23157..25223
DNA (2067bp) protein (689aa)
Putative GAF-modulated sigma54-specific transcriptional regulator, Fis family n=1 Tax=Variovorax paradoxus B4 RepID=T1XKJ4_VARPD
putative GAF-modulated sigma54-specific transcriptional regulator, Fis family
Putative GAF-modulated sigma54-specific transcriptional regulator, Fis family {ECO:0000313|EMBL:AGU53412.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
H2-16-all-fractions_k255_4825555_24
unknown

Not on your lists

25432..25563
DNA (132bp) protein (44aa)
hypothetical protein n=1 Tax=Burkholderia bryophila RepID=UPI00035E7A07
pqqA; coenzyme PQQ synthesis protein A
H2-16-all-fractions_k255_4825555_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25650..26582
DNA (933bp) protein (311aa)
Coenzyme PQQ synthesis protein B n=1 Tax=Variovorax paradoxus B4 RepID=T1XLD6_VARPD
pqqB; coenzyme PQQ synthesis protein B
Coenzyme PQQ synthesis protein B {ECO:0000256|HAMAP-Rule:MF_00653, ECO:0000256|SAAS:SAAS00055095}; Pyrroloquinoline quinone biosynthesis protein B {ECO:0000256|HAMAP-Rule:MF_00653}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
H2-16-all-fractions_k255_4825555_26
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26579..27322
DNA (744bp) protein (248aa)
Pyrroloquinoline-quinone synthase {ECO:0000256|HAMAP-Rule:MF_00654}; EC=1.3.3.11 {ECO:0000256|HAMAP-Rule:MF_00654};; Coenzyme PQQ synthesis protein C {ECO:0000256|HAMAP-Rule:MF_00654}; Pyrroloquinoline quinone biosynthesis protein C {ECO:0000256|HAMAP-Rule:MF_00654}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
pyrroloquinoline quinone biosynthesis protein PqqC n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034978BB
pyrroloquinoline quinone biosynthesis protein PqqC
H2-16-all-fractions_k255_4825555_27
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27319..27591
DNA (273bp) protein (91aa)
pyrroloquinoline quinone biosynthesis protein PqqD n=1 Tax=Ideonella sp. B508-1 RepID=UPI000344C493
pyrroloquinoline quinone biosynthesis protein D
Pyrroloquinoline quinone biosynthesis protein PqqD {ECO:0000313|EMBL:EWS52995.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
H2-16-all-fractions_k255_4825555_28
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27594..28778
DNA (1185bp) protein (395aa)
pyrroloquinoline quinone biosynthesis protein PqqE n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034C22A2
pyrroloquinoline quinone biosynthesis protein PqqE
Coenzyme PQQ synthesis protein E {ECO:0000256|HAMAP-Rule:MF_00660}; Pyrroloquinoline quinone biosynthesis protein E {ECO:0000256|HAMAP-Rule:MF_00660}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
H2-16-all-fractions_k255_4825555_29
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28811..29764
DNA (954bp) protein (318aa)
40-residue YVTN family beta-propeller repeat protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y7F7_LEPCP
hypothetical protein
40-residue YVTN family beta-propeller repeat protein {ECO:0000313|EMBL:ACB36105.1}; Flags: Precursor;; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
H2-16-all-fractions_k255_4825555_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29986..31800
DNA (1815bp) protein (605aa)
Putative quinoprotein ethanol dehydrogenase n=1 Tax=Variovorax paradoxus B4 RepID=T1XKJ9_VARPD
Putative quinoprotein ethanol dehydrogenase {ECO:0000313|EMBL:AGU53417.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
putative quinoprotein ethanol dehydrogenase
Displaying items 1-30 of 33 in total

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