ggKbase | organisms

Consensus taxonomy: Bacteria

Metagenomic Context

Parent: wsip-metawrap-drep-bins_UNK

Properties

Avg. coverage: 0.32 Longest contig: 16.40 Kbp Bin length: 3.23 Mbp GC content: 54.57 %

Contigs count: 992 Features count: 3942 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 40 / 55 MC: 1 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 4

Displaying items 851-900 of 992 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
H2-18-all-fractions_k255_3623754 Species: Pedosphaera parvula (50%)	2	2703 bp	54.57	0.06	89.57
H2-18-all-fractions_k255_5757074 Species: Pedosphaera parvula (50%)	2	5352 bp	55.96	0.11	97.20
H2-18-all-fractions_k255_2620478 Species: Ktedonobacter racemifer (50%)	2	1710 bp	52.75	0.18	65.44
H2-18-all-fractions_k255_5776802	2	1979 bp	52.65	0.91	99.75
H2-18-all-fractions_k255_3046523 Species: RBG_16_Acidobacteria_70_10_curated (50%)	2	2285 bp	54.18	0.26	97.29
H2-18-all-fractions_k255_3672222 Species: Akkermansia sp. CAG:344 (50%)	2	1518 bp	53.95	0.59	100.79
H2-18-all-fractions_k255_1804073 Species: Chthoniobacter flavus (50%)	2	2599 bp	53.52	0.12	96.61
H2-18-all-fractions_k255_1815783 Species: Methylacidiphilum infernorum (50%)	2	1651 bp	52.82	0.91	99.94
H2-18-all-fractions_k255_3694426 Species: RBG_16_Chloroflexi_54_18_curated (50%)	2	1913 bp	53.53	0.00	85.94
H2-18-all-fractions_k255_1822127 Species: Prochlorococcus marinus (50%)	2	1687 bp	54.18	0.18	91.58
H2-18-all-fractions_k255_5849591 Species: Calothrix parietina (50%)	2	1554 bp	54.05	1.64	100.19
H2-18-all-fractions_k255_1568748 Species: RIFOXYD12_FULL_Deltaproteobacteria_50_9_curated (50%)	2	1597 bp	49.41	0.38	99.56
H2-18-all-fractions_k255_1836711 Species: Singulisphaera acidiphila (50%)	2	2273 bp	53.32	0.26	93.84
H2-18-all-fractions_k255_2995970	2	1622 bp	46.79	0.46	100.25
H2-18-all-fractions_k255_1838306 Species: Chthoniobacter flavus (50%)	2	2184 bp	54.99	0.14	86.26
H2-18-all-fractions_k255_3735750 Species: RBG_16_RIF_WS3X_71_46_curated (50%)	2	2570 bp	53.54	0.29	86.85
H2-18-all-fractions_k255_5881614 Species: Chthoniobacter flavus (100%)	2	1757 bp	54.07	0.00	100.06
H2-18-all-fractions_k255_2993767 Species: Nitrosococcus halophilus (50%)	2	1690 bp	58.28	0.00	77.40
H2-18-all-fractions_k255_2573468 Species: RBG_16_Zixibacteria_43_9_curated (50%)	2	1659 bp	56.24	0.90	100.00
H2-18-all-fractions_k255_1850216 Species: Chthoniobacter flavus (50%)	2	1504 bp	56.78	0.00	92.35
H2-18-all-fractions_k255_3764323 Species: uncultured bacterium (50%)	2	1715 bp	57.67	0.09	69.45
H2-18-all-fractions_k255_1852108 Species: Pedosphaera parvula (50%)	2	3252 bp	53.97	0.60	93.27
H2-18-all-fractions_k255_5929225 Species: R_Betaproteobacteria_64_12 (50%)	2	1561 bp	53.04	0.29	74.57
H2-18-all-fractions_k255_3776452 Species: Capronia epimyces (50%)	2	2179 bp	56.22	0.00	83.43
H2-18-all-fractions_k255_5969968 Species: Pedosphaera parvula (50%)	2	2664 bp	56.83	0.00	98.20
H2-18-all-fractions_k255_5981104 Species: Chthoniobacter flavus (100%)	2	1792 bp	54.24	0.33	94.42
H2-18-all-fractions_k255_6039264 Species: Pedobacter kyungheensis (50%)	2	1700 bp	54.82	1.68	97.41
H2-18-all-fractions_k255_6046484 Species: Methanosarcina acetivorans (50%)	2	1511 bp	55.53	0.60	96.49
H2-18-all-fractions_k255_5959707 Species: Amycolatopsis methanolica (50%)	2	1873 bp	50.61	1.12	93.54
H2-18-all-fractions_k255_3798216 Species: Candidatus Koribacter versatilis (50%)	2	1714 bp	55.89	0.26	94.34
H2-18-all-fractions_k255_5768945 Species: Indibacter alkaliphilus (50%)	2	1836 bp	42.76	0.65	77.29
H2-18-all-fractions_k255_1976124 Species: Chthoniobacter flavus (50%)	2	2498 bp	54.64	0.00	98.48
H2-18-all-fractions_k255_3832676 Species: Chthoniobacter flavus (100%)	2	1806 bp	57.20	0.00	100.17
H2-18-all-fractions_k255_5735095 Species: Agrobacterium rubi (50%)	2	2236 bp	54.70	0.34	86.00
H2-18-all-fractions_k255_3867861 Species: Pedosphaera parvula (50%)	2	2234 bp	53.36	0.40	91.58
H2-18-all-fractions_k255_5615633 Species: RLO_PLX_64_10 (100%)	2	1548 bp	50.52	0.19	65.50
H2-18-all-fractions_k255_3909301 Species: Hymenobacter sp. APR13 (50%)	2	1690 bp	54.44	0.27	67.46
H2-18-all-fractions_k255_5497199 Species: Chthoniobacter flavus (50%)	2	1747 bp	57.30	0.00	86.89
H2-18-all-fractions_k255_2071523 Species: Kutzneria albida (50%)	2	1765 bp	53.77	0.08	95.01
H2-18-all-fractions_k255_5602842 Species: Pyrinomonas methylaliphatogenes (100%)	2	1639 bp	57.78	0.18	98.11
H2-18-all-fractions_k255_2080565 Species: Chthoniobacter flavus (100%)	2	2322 bp	53.57	0.52	95.87
H2-18-all-fractions_k255_5066621 Species: uncultured bacterium BLR5 (50%)	2	1785 bp	54.06	0.84	90.76
H2-18-all-fractions_k255_5070031 Species: GWD2_Elusimicrobia_63_28_curated (50%)	2	2331 bp	53.97	0.51	95.88
H2-18-all-fractions_k255_4007903 Species: Chthoniobacter flavus (100%)	2	1718 bp	53.84	0.44	89.06
H2-18-all-fractions_k255_4039479 Species: RLO_Betaproteobacteria_65_14 (50%)	2	1755 bp	54.47	0.00	99.83
H2-18-all-fractions_k255_25017 Species: Candidatus Koribacter versatilis (50%)	2	2094 bp	54.68	0.36	56.16
H2-18-all-fractions_k255_2163291 Species: Candidatus Solibacter usitatus (50%)	2	1678 bp	55.78	0.18	93.50
H2-18-all-fractions_k255_4947072 Species: Candidatus Solibacter usitatus (50%)	2	2082 bp	54.13	0.72	66.57
H2-18-all-fractions_k255_2169469 Species: RBG_16_Caldithrix_48_16_curated (50%)	2	1743 bp	55.25	0.43	93.80
H2-18-all-fractions_k255_2206660 Species: Chthoniobacter flavus (50%)	2	2347 bp	53.17	0.00	96.89

Displaying items 851-900 of 992 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (H2-18-all-fractions_metab_49) and add all its contigs / scaffolds to the organism you choose below

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Other organism

H2-18-all-fractions_metab_49

wsip-metawrap-drep-bins_Bacteria_55_0

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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