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H3-18-all-fractions_k255_122115

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
H3-18-all-fractions_k255_122115_1
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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2..1900
DNA (1899bp) protein (633aa)
translation elongation factor 2 (EF-2/EF-G) (EC:3.6.5.3)
Elongation factor G n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIM5_CHLTF
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
H3-18-all-fractions_k255_122115_2
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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1999..3186
DNA (1188bp) protein (396aa)
translation elongation factor 1A (EF-1A/EF-Tu) (EC:3.6.5.3)
Elongation factor Tu n=2 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHU1_CHLTF
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
H3-18-all-fractions_k255_122115_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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3262..3414
DNA (153bp) protein (51aa)
50S ribosomal protein L33 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=RL33_SOLUE
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
50S ribosomal protein L33
H3-18-all-fractions_k255_122115_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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3638..3979
DNA (342bp) protein (114aa)
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE id=17522683 bin=RBG_16_Aminicenantes_63_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
H3-18-all-fractions_k255_122115_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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3999..4559
DNA (561bp) protein (187aa)
Transcription termination/antitermination protein NusG n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHU3_CHLTF
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
transcription antitermination protein nusG
H3-18-all-fractions_k255_122115_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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4650..5075
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=3 Tax=Halomonas RepID=G4FA85_9GAMM
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
ribosomal protein L11
H3-18-all-fractions_k255_122115_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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5208..5903
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SBQ7_9BACT
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
50S ribosomal protein L1P
H3-18-all-fractions_k255_122115_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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5923..6459
DNA (537bp) protein (179aa)
50S ribosomal protein L10 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=RL10_KORVE
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rplJ; 50S ribosomal protein L10
H3-18-all-fractions_k255_122115_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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6710..7093
DNA (384bp) protein (128aa)
50S ribosomal protein L7/L12 n=1 Tax=Sulfurihydrogenibium sp. (strain YO3AOP1) RepID=RL7_SULSY
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rplL; 50S ribosomal protein L7/L12
H3-18-all-fractions_k255_122115_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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7454..11944
DNA (4491bp) protein (1497aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHU8_CHLTF
H3-18-all-fractions_k255_122115_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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12077..16327
DNA (4251bp) protein (1417aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322, ECO:0000256|RuleBase:RU004279};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHU9_CHLTF
H3-18-all-fractions_k255_122115_12
Arthrospira platensis, Arthrospira, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(16404..16967)
DNA (564bp) protein (188aa)
Type II site-specific deoxyribonuclease n=2 Tax=Arthrospira RepID=K1W5A2_ARTPT
Type II site-specific deoxyribonuclease {ECO:0000313|EMBL:EKD08191.1}; TaxID=459495 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Arthrospira.;" source="Arthrospira platensis C1.;"
type II restriction endonuclease PvuII
H3-18-all-fractions_k255_122115_13
Wolbachia endosymbiont of Cimex lectularius, Wolbachia, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17219..18256
DNA (1038bp) protein (346aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=246273 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Wolbachieae; Wolbachia.;" source="Wolbachia endosymbiont of Cimex lectularius.;"
hypothetical protein n=1 Tax=Fischerella muscicola RepID=UPI000365F0F0
site-specific DNA methyltransferase
H3-18-all-fractions_k255_122115_14
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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19091..19789
DNA (699bp) protein (233aa)
Uncharacterized protein {ECO:0000313|EMBL:EXI68887.1}; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
id=12554036 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
H3-18-all-fractions_k255_122115_15
unknown

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20024..21142
DNA (1119bp) protein (373aa)

This feature has no annotations

H3-18-all-fractions_k255_122115_16

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21402..22646
DNA (1245bp) protein (415aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN25337.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
amidohydrolase id=24442777 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=Leeuwenhoekiella blandensis genus=Leeuwenhoekiella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
amidohydrolase
H3-18-all-fractions_k255_122115_17
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

23167..25545
DNA (2379bp) protein (793aa)
S-layer domain-containing protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FH43_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDM65839.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
aggregation factor core protein MAFp3, isoform C
H3-18-all-fractions_k255_122115_18
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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25709..26770
DNA (1062bp) protein (354aa)
Serine/Threonine protein kinase with WD40 repeats id=4650206 bin=GWA2_Ignavibacteria_55_11 species=Nodularia spumigena genus=Nodularia taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
H3-18-all-fractions_k255_122115_19
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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26912..29506
DNA (2595bp) protein (865aa)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8TDX2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIT71898.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
his Kinase A domain protein
H3-18-all-fractions_k255_122115_20
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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29573..31000
DNA (1428bp) protein (476aa)
Beta-lactamase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IN32_KORVE
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:AHG93029.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_122115_21

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comp(31081..31746)
DNA (666bp) protein (222aa)
Putative uncharacterized protein n=1 Tax=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) RepID=C4LKK0_CORK4
Uncharacterized protein {ECO:0000313|EMBL:KGA12574.1}; TaxID=449393 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
hypothetical protein
H3-18-all-fractions_k255_122115_22
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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32325..32747
DNA (423bp) protein (141aa)
30S ribosomal protein S12 n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=RS12_ACIC5
rpsL; 30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000255|HAMAP-Rule:MF_00403}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
H3-18-all-fractions_k255_122115_23
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


32773..33243
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Desulfovibrio hydrothermalis AM13 = DSM 14728 RepID=L0RI32_9DELT
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rpsG; ribosomal protein S7 (BS7)
H3-18-all-fractions_k255_122115_24
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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33372..33716
DNA (345bp) protein (115aa)
elongation factor G n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI0003687448
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
fusA; elongation factor G
Displaying 24 items

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