ggKbase home page

H3-18-all-fractions_k255_2538273

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
H3-18-all-fractions_k255_2538273_1
Methanoculleus bourgensis, Methanoculleus, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2..1294
DNA (1293bp) protein (431aa)
UvrD/REP helicase (EC:3.6.4.12)
UvrD/REP helicase {ECO:0000313|EMBL:CCJ36984.1}; EC=3.6.4.12 {ECO:0000313|EMBL:CCJ36984.1};; TaxID=1201294 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanoculleus.;" source="Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 /; MS2) (Methanogenium bourgense).;"
UvrD/REP helicase n=1 Tax=Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) RepID=I7LND0_METBM
H3-18-all-fractions_k255_2538273_2
BJP_IG2158_Actinobacteria_57_21, Bacteria

Not on your lists

1291..2424
DNA (1134bp) protein (378aa)
hypothetical protein n=1 Tax=Actinomadura flavalba RepID=UPI00036CED0C
hypothetical protein
Tax=BJP_IG2158_Actinobacteria_57_21
H3-18-all-fractions_k255_2538273_3
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2421..3410
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LH86_HALO1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY18231.1}; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
H3-18-all-fractions_k255_2538273_4

Not on your lists

3573..3983
DNA (411bp) protein (137aa)
Nudix family protein, MutT subfamily n=1 Tax=uncultured marine bacterium Ant4D5 RepID=Q2PXZ7_9BACT
Nudix family protein, MutT subfamily {ECO:0000313|EMBL:ABC25430.1}; TaxID=360428 species="Bacteria; environmental samples.;" source="uncultured marine bacterium Ant4D5.;"
pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase
H3-18-all-fractions_k255_2538273_5
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4125..4901
DNA (777bp) protein (259aa)
Uncharacterized protein {ECO:0000313|EMBL:AKH21727.1}; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
Putative uncharacterized protein id=3580217 bin=GWC2_Methylomirabilis_70_16 species=Rhodococcus equi genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
H3-18-all-fractions_k255_2538273_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(5065..5451)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABI5_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG90675.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_2538273_7
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(5676..6434)
DNA (759bp) protein (253aa)
hypothetical protein id=53381 bin=ACD41 species=ACD41 genus=ACD41 taxon_order=ACD41 taxon_class=ACD41 phylum=OD1 tax=ACD41 organism_group=OD1 (Parcubacteria) organism_desc=OD1
hypothetical protein
Tax=RBG_13_Planctomycetes_62_9_curated
H3-18-all-fractions_k255_2538273_8
unknown

Not on your lists

6631..6846
DNA (216bp) protein (72aa)

This feature has no annotations

H3-18-all-fractions_k255_2538273_9
RifOxyA12_full_Proteobacteria_58_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6843..7316)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Rhodopirellula baltica WH47 RepID=F2AM77_RHOBT
hypothetical protein
Tax=RifOxyA12_full_Proteobacteria_58_15_curated
H3-18-all-fractions_k255_2538273_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

8001..9146
DNA (1146bp) protein (382aa)
S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}; EC=2.5.1.6 {ECO:0000256|RuleBase:RU000541};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
S-adenosylmethionine synthase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHT4_KORVE
S-adenosylmethionine synthetase
H3-18-all-fractions_k255_2538273_11
Streptomyces albulus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9625..10479
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Streptomyces albulus CCRC 11814 RepID=S0H252_STRA9
putative arginase
Putative arginase {ECO:0000313|EMBL:AIA07119.1}; TaxID=68570 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces albulus.;"
H3-18-all-fractions_k255_2538273_12
Burkholderia sp. MSHR3999, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10711..12120
DNA (1410bp) protein (470aa)
ABC transporter substrate-binding protein n=1 Tax=Burkholderia ubonensis RepID=UPI00016A2EE7
periplasmic binding domain protein
KY49.ctg7180000000020_quiver, whole genome shotgun sequence {ECO:0000313|EMBL:KIP16720.1}; TaxID=1542965 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSHR3999.;"
H3-18-all-fractions_k255_2538273_13
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12253..13746)
DNA (1494bp) protein (498aa)
Pyridoxal-dependent decarboxylase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LTG8_HALO1
pyridoxal-dependent decarboxylase
Pyridoxal-dependent decarboxylase {ECO:0000313|EMBL:ACY13863.1}; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
H3-18-all-fractions_k255_2538273_14
Leptolyngbya sp. Heron Island J, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(13876..14778)
DNA (903bp) protein (301aa)
Family transcriptional regulator n=1 Tax=Leptolyngbya sp. Heron Island J RepID=U9VVG0_9CYAN
Family transcriptional regulator {ECO:0000313|EMBL:ESA34773.1}; TaxID=1385935 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. Heron Island J.;"
AraC family transcriptional regulator
H3-18-all-fractions_k255_2538273_15
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15022..15405)
DNA (384bp) protein (128aa)
cupin n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00037E2254
Cupin {ECO:0000313|EMBL:KDP72067.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein
H3-18-all-fractions_k255_2538273_16
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15517..16692)
DNA (1176bp) protein (392aa)
Peptidase n=1 Tax=Lysobacter sp. ATCC 53042 RepID=F8TUB8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AHE56893.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
H3-18-all-fractions_k255_2538273_17
unknown

Not on your lists

comp(16697..16921)
DNA (225bp) protein (75aa)

This feature has no annotations

H3-18-all-fractions_k255_2538273_18
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17259..17717
DNA (459bp) protein (153aa)
Acetyltransferase n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CJ70_MYXFH
acetyltransferase
Acetyltransferase {ECO:0000313|EMBL:AEI68852.1}; TaxID=483219 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus (strain ATCC BAA-855 / HW-1).;"
H3-18-all-fractions_k255_2538273_19
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(17839..18699)
DNA (861bp) protein (287aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGR3_SINAD
DNA-binding domain-containing protein
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:AGA27998.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
H3-18-all-fractions_k255_2538273_20
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18936..20429
DNA (1494bp) protein (498aa)
Decarboxylase, group II n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UCR4_MYXSD
decarboxylase, group II
Decarboxylase, group II {ECO:0000313|EMBL:AGC46696.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
H3-18-all-fractions_k255_2538273_21
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20607..21233
DNA (627bp) protein (209aa)
Putative pyridoxamine 5'-phosphate oxidase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z2G1_AZOL4
putative pyridoxamine 5'-phosphate oxidase
Putative pyridoxamine 5'-phosphate oxidase {ECO:0000313|EMBL:CBS85569.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
H3-18-all-fractions_k255_2538273_22
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21343..21876
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000360A471
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF48368.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
H3-18-all-fractions_k255_2538273_23
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21924..22304
DNA (381bp) protein (127aa)
NUDIX hydrolase n=1 Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3QAN2_STANL
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:ADD44678.1}; TaxID=446470 species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
H3-18-all-fractions_k255_2538273_24
unknown

Not on your lists

22301..22804
DNA (504bp) protein (168aa)

This feature has no annotations

H3-18-all-fractions_k255_2538273_25
Kangiella koreensis, Kangiella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22847..23401)
DNA (555bp) protein (185aa)
TPR repeat-containing protein n=1 Tax=Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125) RepID=C7R919_KANKD
hypothetical protein
TPR repeat-containing protein {ECO:0000313|EMBL:ACV27809.1}; Flags: Precursor;; TaxID=523791 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Kangiella.;" source="Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125).;"
H3-18-all-fractions_k255_2538273_26
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23829..24323)
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00037AAAF7
AsnC family transcriptional regulator
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ACV79279.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
H3-18-all-fractions_k255_2538273_27
unknown

Not on your lists

24390..24719
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00035C3DEB
Displaying 27 items

View Taxonomy