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S1-16-all-fractions_k255_5363633

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S1-16-all-fractions_k255_5363633_1
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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3..632
DNA (630bp) protein (210aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu n=1 Tax=Nocardioides sp. CF8 RepID=R7Y0L7_9ACTO
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
S1-16-all-fractions_k255_5363633_2
Janibacter hoylei, Janibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

717..1307
DNA (591bp) protein (197aa)
G/U mismatch-specific uracil-DNA glycosylase n=1 Tax=Janibacter hoylei PVAS-1 RepID=K1E5K1_9MICO
G/U mismatch-specific uracil-DNA glycosylase {ECO:0000313|EMBL:EKA62331.1}; TaxID=1210046 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Janibacter.;" source="Janibacter hoylei PVAS-1.;"
DNA glycosylase
S1-16-all-fractions_k255_5363633_3
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(1342..1761)
DNA (420bp) protein (140aa)
Putative membrane protein n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0JYA0_SACES
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCH30312.1}; TaxID=1179773 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
S1-16-all-fractions_k255_5363633_4
Janibacter hoylei, Janibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1864..3312)
DNA (1449bp) protein (483aa)
Succinate semialdehyde dehydrogenase n=1 Tax=Janibacter hoylei PVAS-1 RepID=K1DVA7_9MICO
Succinate semialdehyde dehydrogenase {ECO:0000313|EMBL:EKA60329.1}; TaxID=1210046 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Janibacter.;" source="Janibacter hoylei PVAS-1.;"
succinate-semialdehyde dehydrogenase
S1-16-all-fractions_k255_5363633_5
Janibacter sp. HTCC2649, Janibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(3309..4664)
DNA (1356bp) protein (452aa)
4-aminobutyrate aminotransferase {ECO:0000313|EMBL:EAQ00198.1}; EC=2.6.1.19 {ECO:0000313|EMBL:EAQ00198.1};; TaxID=313589 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Janibacter.;" source="Janibacter sp. HTCC2649.;"
4-aminobutyrate aminotransferase (EC:2.6.1.19)
4-aminobutyrate aminotransferase n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TH88_9MICO
S1-16-all-fractions_k255_5363633_6
Janibacter sp. HTCC2649, Janibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4661..5968)
DNA (1308bp) protein (436aa)
Putative ATP binding protein n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TH89_9MICO
Putative ATP binding protein {ECO:0000313|EMBL:EAQ00199.1}; TaxID=313589 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Janibacter.;" source="Janibacter sp. HTCC2649.;"
saccharopine dehydrogenase
S1-16-all-fractions_k255_5363633_7
Tetrasphaera elongata, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(5972..6826)
DNA (855bp) protein (285aa)
Putative polyamine ABC-transporter integral membrane protein n=1 Tax=Tetrasphaera elongata Lp2 RepID=N0E6B0_9MICO
Putative polyamine ABC-transporter integral membrane protein {ECO:0000313|EMBL:CCH71229.1}; TaxID=1193181 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera elongata Lp2.;"
ABC-type spermidine/putrescine transport system, permease component II
S1-16-all-fractions_k255_5363633_8
Tetrasphaera australiensis, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6837..7748)
DNA (912bp) protein (304aa)
Putative polyamine ABC transporter permease protein n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TH91_9MICO
Putative polyamine ABC transporter permease protein {ECO:0000313|EMBL:CCH74467.1}; TaxID=1193182 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera australiensis Ben110.;"
binding-protein-dependent transport system inner membrane protein
S1-16-all-fractions_k255_5363633_9
Tetrasphaera elongata, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7816..8916)
DNA (1101bp) protein (367aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1193181 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera elongata Lp2.;"
Putrescine transporter subunit: ATP-binding component of ABC superfamily n=1 Tax=Tetrasphaera elongata Lp2 RepID=N0E5B9_9MICO
Polyamine ABC transporter ATP-binding protein
S1-16-all-fractions_k255_5363633_10
Janibacter hoylei, Janibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8918..10168)
DNA (1251bp) protein (417aa)
Polyamine ABC transporter substrate-binding protein n=1 Tax=Janibacter hoylei PVAS-1 RepID=K1E4P7_9MICO
Polyamine ABC transporter substrate-binding protein {ECO:0000313|EMBL:EKA60322.1}; TaxID=1210046 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Janibacter.;" source="Janibacter hoylei PVAS-1.;"
polyamine ABC transporter substrate-binding protein
S1-16-all-fractions_k255_5363633_11
Tetrasphaera australiensis, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10229..11674)
DNA (1446bp) protein (482aa)
Putative dehydrogenase (Putative aldehyde dehydrogenase) {ECO:0000313|EMBL:CCH74470.1}; EC=1.2.1.3 {ECO:0000313|EMBL:CCH74470.1};; TaxID=1193182 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera australiensis Ben110.;"
Putative aldehyde dehydrogenase n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TH94_9MICO
aldehyde dehydrogenase
S1-16-all-fractions_k255_5363633_12
Tetrasphaera elongata, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11837..12307
DNA (471bp) protein (157aa)
Putative AsnC-family transcriptional regulator n=1 Tax=Tetrasphaera elongata Lp2 RepID=N0E6B1_9MICO
Putative AsnC-family transcriptional regulator {ECO:0000313|EMBL:CCH71234.1}; TaxID=1193181 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera elongata Lp2.;"
AsnC family transcriptional regulator
S1-16-all-fractions_k255_5363633_13
Janibacter hoylei, Janibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12304..13683
DNA (1380bp) protein (460aa)
Uncharacterized protein n=1 Tax=Janibacter hoylei PVAS-1 RepID=K1DVA2_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EKA60319.1}; TaxID=1210046 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Janibacter.;" source="Janibacter hoylei PVAS-1.;"
class III aminotransferase
S1-16-all-fractions_k255_5363633_14
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13753..14478
DNA (726bp) protein (242aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Nocardioides sp. CF8 RepID=R7Y0P0_9ACTO
tRNA (guanine-N7)-methyltransferase
S1-16-all-fractions_k255_5363633_15
Aphanomyces astaci, Aphanomyces, Saprolegniales, Eukaryota

Not on your lists

comp(14457..15185)
DNA (729bp) protein (243aa)
hypothetical protein n=1 Tax=Ornithinimicrobium pekingense RepID=UPI0003B78FCD
Uncharacterized protein {ECO:0000313|EMBL:ETV81838.1}; TaxID=112090 species="Eukaryota; Stramenopiles; Oomycetes; Saprolegniales; Saprolegniaceae; Aphanomyces.;" source="Aphanomyces astaci.;"
TPR repeat protein
S1-16-all-fractions_k255_5363633_16
Nocardioides luteus, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15239..16066
DNA (828bp) protein (276aa)
Adenine deaminase-related protein n=1 Tax=Nocardioidaceae bacterium Broad-1 RepID=E9UPI4_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KJR05614.1}; TaxID=1844 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides luteus.;"
hypothetical protein
S1-16-all-fractions_k255_5363633_17
Nocardioides luteus, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


16467..16775
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=2 Tax=Nocardioidaceae RepID=RS10_NOCSJ
rpsJ; 30S ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1844 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides luteus.;"
S1-16-all-fractions_k255_5363633_18
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


16785..17459
DNA (675bp) protein (225aa)
50S ribosomal protein L3 n=1 Tax=Nocardioides sp. CF8 RepID=R7Y1M2_9ACTO
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
rplC; 50S ribosomal protein L3
S1-16-all-fractions_k255_5363633_19
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


17462..18328
DNA (867bp) protein (289aa)
50S ribosomal protein L4 n=1 Tax=Nocardioides sp. CF8 RepID=R7Y0Q0_9ACTO
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
50S ribosomal protein L4
S1-16-all-fractions_k255_5363633_20
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


18325..18630
DNA (306bp) protein (102aa)
50S ribosomal protein L23 n=1 Tax=Nocardioides sp. CF8 RepID=R7Y0K6_9ACTO
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
rplW; 50S ribosomal protein L23
Displaying 20 items

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