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S1-18-all-fractions_k255_968243

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S1-18-all-fractions_k255_968243_1
unknown

Not on your lists

comp(3..593)
DNA (591bp) protein (197aa)

This feature has no annotations

S1-18-all-fractions_k255_968243_2
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(770..3016)
DNA (2247bp) protein (749aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595, ECO:0000256|SAAS:SAAS00274805}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595, ECO:0000256|SAAS:SAAS00274803};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
polynucleotide phosphorylase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B399AD
S1-18-all-fractions_k255_968243_3
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(3368..3637)
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B3E580
30S ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=656024 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
S1-18-all-fractions_k255_968243_4
Gordonia paraffinivorans, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3767..4666)
DNA (900bp) protein (300aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1223543 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia paraffinivorans NBRC 108238.;"
riboflavin biosynthesis protein RibF (EC:2.7.1.26 2.7.7.2)
riboflavin kinase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B3B36E
S1-18-all-fractions_k255_968243_5
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4727..5221)
DNA (495bp) protein (165aa)
3-dehydroquinate dehydratase I (EC:4.2.1.10)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
3-dehydroquinate dehydratase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B5B453
S1-18-all-fractions_k255_968243_6
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5214..6329)
DNA (1116bp) protein (372aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
3-dehydroquinate synthase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B4091F
3-dehydroquinate synthase
S1-18-all-fractions_k255_968243_7
Actinomyces sp. ICM54, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6326..6844)
DNA (519bp) protein (173aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=936549 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces sp. ICM54.;"
shikimate kinase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B6702C
hypothetical protein
S1-18-all-fractions_k255_968243_8
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6844..8079)
DNA (1236bp) protein (412aa)
chorismate synthase (EC:4.2.3.5)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=471852 species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
chorismate synthase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B5A712
S1-18-all-fractions_k255_968243_9
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8136..9257
DNA (1122bp) protein (374aa)
hypothetical protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B66439
Molybdopterin-guanine dinucleotide biosynthesis protein A {ECO:0000313|EMBL:EIV96045.1}; TaxID=710111 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
molybdopterin-guanine dinucleotide biosynthesis protein
S1-18-all-fractions_k255_968243_10
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9181..10029)
DNA (849bp) protein (283aa)
shikimate 5-dehydrogenase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B37360
Shikimate 5-dehydrogenase {ECO:0000313|EMBL:EXG81321.1}; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
shikimate-5-dehydrogenase
S1-18-all-fractions_k255_968243_11
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10029..11183)
DNA (1155bp) protein (385aa)
aminodeoxychorismate lyase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B46BD7
putative periplasmic solute-binding protein
Predicted periplasmic solute-binding protein {ECO:0000313|EMBL:CCG03248.1}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
S1-18-all-fractions_k255_968243_12
Saccharopolyspora rectivirgula, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11210..12070)
DNA (861bp) protein (287aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=28042 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora rectivirgula.;"
Holliday junction resolvase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B43DD0
Holliday junction resolvase YqgF
S1-18-all-fractions_k255_968243_13
Saccharomonospora glauca, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12072..12482)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B5025E
Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain {ECO:0000313|EMBL:EIE98651.1}; Flags: Precursor;; TaxID=928724 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora glauca K62.;"
hypothetical protein
S1-18-all-fractions_k255_968243_14
Saccharomonospora viridis, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12662..14023)
DNA (1362bp) protein (454aa)
ATPase AAA n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B57890
recombination factor protein RarA
Recombination protein MgsA {ECO:0000313|EMBL:ACU96559.1}; TaxID=471857 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 /; NBRC 12207 / P101).;"
S1-18-all-fractions_k255_968243_15
Dermacoccus nishinomiyaensis, Dermacoccus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14290..15171
DNA (882bp) protein (294aa)
formate dehydrogenase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B2F767
formate dehydrogenase
Protein FdhD homolog {ECO:0000256|HAMAP-Rule:MF_00187, ECO:0000256|SAAS:SAAS00093832}; TaxID=1274 species="Bacteria; Actinobacteria; Micrococcales; Dermacoccaceae; Dermacoccus.;" source="Dermacoccus nishinomiyaensis.;"
S1-18-all-fractions_k255_968243_16
unknown

Not on your lists

comp(15349..15549)
DNA (201bp) protein (67aa)
hypothetical protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B79406
S1-18-all-fractions_k255_968243_17
Aeromicrobium marinum, Aeromicrobium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15976..16503
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=E2SE14_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EFQ82741.1}; TaxID=585531 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Aeromicrobium.;" source="Aeromicrobium marinum DSM 15272.;"
hypothetical protein
S1-18-all-fractions_k255_968243_18
Streptomyces fradiae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16463..18010)
DNA (1548bp) protein (516aa)
hypothetical protein n=1 Tax=Streptomyces sp. HmicA12 RepID=UPI00036E17E0
HNH endonuclease {ECO:0000313|EMBL:KDS87392.1}; TaxID=1906 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fradiae (Streptomyces roseoflavus).;"
hypothetical protein
S1-18-all-fractions_k255_968243_19
Mycobacterium llatzerense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18404..19411)
DNA (1008bp) protein (336aa)
Biotin synthase {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00009987}; EC=2.8.1.6 {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00250466};; TaxID=280871 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium llatzerense.;"
biotin synthase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B753A6
bioB; biotin synthase
S1-18-all-fractions_k255_968243_20
Streptomyces fradiae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19408..20151)
DNA (744bp) protein (248aa)
ATP-dependent dethiobiotin synthetase BioD {ECO:0000256|HAMAP-Rule:MF_00336}; EC=6.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00336};; DTB synthetase {ECO:0000256|HAMAP-Rule:MF_00336}; Dethiobiotin synthase {ECO:0000256|HAMAP-Rule:MF_00336}; TaxID=1906 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fradiae (Streptomyces roseoflavus).;"
dithiobiotin synthetase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B34797
dethiobiotin synthetase
S1-18-all-fractions_k255_968243_21
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20160..21422)
DNA (1263bp) protein (421aa)
8-amino-7-oxononanoate synthase (EC:2.3.1.47)
8-amino-7-oxononanoate synthase {ECO:0000313|EMBL:AEA25037.1}; EC=2.3.1.47 {ECO:0000313|EMBL:AEA25037.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
8-amino-7-oxononanoate synthase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B660E4
S1-18-all-fractions_k255_968243_22
Kitasatospora setae, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21403..22710)
DNA (1308bp) protein (436aa)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00834}; EC=2.6.1.62 {ECO:0000256|HAMAP-Rule:MF_00834};; 7,8-diamino-pelargonic acid aminotransferase {ECO:0000256|HAMAP-Rule:MF_00834}; 7,8-diaminononanoate synthase {ECO:0000256|HAMAP-Rule:MF_00834}; Diaminopelargonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00834}; TaxID=452652 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC; A-0304 / NBRC 14216 / KM-6054) (Streptomyces setae).;"
adenosylmethionine--8-amino-7-oxononanoate aminotransferase n=1 Tax=Streptomyces sp. FxanaC1 RepID=UPI00036B35EF
bioA; putative adenosylmethionine-8-amino-7-oxononanoate aminotransferase
S1-18-all-fractions_k255_968243_23
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(22703..24529)
DNA (1827bp) protein (609aa)
aspartyl-tRNA synthase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B66B44
aspartyl-tRNA synthetase
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:ADB33423.1}; TaxID=479435 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
S1-18-all-fractions_k255_968243_24
Mumia flava, Mumia, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(24593..25978)
DNA (1386bp) protein (462aa)
Histidine--tRNA ligase {ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|SAAS:SAAS00043629};; TaxID=1348852 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Mumia.;" source="Mumia flava.;"
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
histidyl-tRNA synthase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B44DCC
S1-18-all-fractions_k255_968243_25
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25975..26661)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B716F9
Metallo-beta-lactamase {ECO:0000313|EMBL:EWM64474.1}; TaxID=457406 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
putative hydrolase
S1-18-all-fractions_k255_968243_26
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26909..27787
DNA (879bp) protein (293aa)
ppiB2; putative peptidyl-prolyl cis-trans isomerase B (EC:5.2.1.8)
Putative peptidyl-prolyl cis-trans isomerase B {ECO:0000313|EMBL:CCG03235.1}; EC=5.2.1.8 {ECO:0000313|EMBL:CCG03235.1};; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
hypothetical protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B4E7DA
S1-18-all-fractions_k255_968243_27
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28019..30058
DNA (2040bp) protein (680aa)
Zinc metalloprotease n=3 Tax=Amycolatopsis mediterranei RepID=D8HMY8_AMYMU
zinc metalloprotease
Zinc metalloprotease {ECO:0000313|EMBL:AEK44555.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
S1-18-all-fractions_k255_968243_28
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30245..32764)
DNA (2520bp) protein (840aa)
(P)ppGpp synthetase I, SpoT/RelA {ECO:0000313|EMBL:ADB75777.1}; EC=2.7.6.5 {ECO:0000313|EMBL:ADB75777.1};; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
(p)ppGpp synthetase I SpoT/RelA (EC:2.7.6.5)
GTP pyrophosphokinase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B742C5
S1-18-all-fractions_k255_968243_29
Streptomyces vietnamensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33080..33625)
DNA (546bp) protein (182aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=362257 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces vietnamensis.;"
adenine phosphoribosyltransferase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B6E478
adenine phosphoribosyltransferase
S1-18-all-fractions_k255_968243_30
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33622..34716)
DNA (1095bp) protein (365aa)
Protein-export membrane protein SecF n=1 Tax=Frankia sp. EUN1f RepID=D3CZS6_9ACTO
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
secF; protein-export membrane protein secF
Displaying items 1-30 of 60 in total

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