ggKbase home page

S3-16-all-fractions_k255_4132111

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S3-16-all-fractions_k255_4132111_1
unknown

Not on your lists

3..233
DNA (231bp) protein (77aa)

This feature has no annotations

S3-16-all-fractions_k255_4132111_2
Arthrobacter globiformis, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

376..981
DNA (606bp) protein (202aa)
riboflavin biosynthesis protein RibD n=1 Tax=Patulibacter americanus RepID=UPI0003B40612
Putative uncharacterized protein {ECO:0000313|EMBL:GAB13737.1}; TaxID=1077972 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter globiformis NBRC 12137.;"
bifunctional deaminase-reductase domain-containing protein
S3-16-all-fractions_k255_4132111_3
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1446..2936
DNA (1491bp) protein (497aa)
Melamine deaminase; EC=3.5.4.n3;; TaxID=80869 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (Acidovorax avenae subsp. citrulli).;"
Melamine deaminase n=1 Tax=Acidovorax citrulli RepID=TRIA_ACIAI
cytosine deaminase-like metal-dependent hydrolase
S3-16-all-fractions_k255_4132111_4
Deinococcus maricopensis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

2939..4441
DNA (1503bp) protein (501aa)
betaine-aldehyde dehydrogenase (EC:1.2.1.8)
Betaine-aldehyde dehydrogenase {ECO:0000313|EMBL:ADV66752.1}; EC=1.2.1.8 {ECO:0000313|EMBL:ADV66752.1};; TaxID=709986 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946; / LB-34).;"
Betaine-aldehyde dehydrogenase n=1 Tax=Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34) RepID=E8U6R3_DEIML
S3-16-all-fractions_k255_4132111_5
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4438..5196
DNA (759bp) protein (253aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100)
Putative 3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:CAL78533.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CAL78533.1};; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
Putative 3-oxoacyl-[acyl-carrier-protein] reductase n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YXA7_BRASO
S3-16-all-fractions_k255_4132111_6
Mumia flava, Mumia, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5377..6423
DNA (1047bp) protein (349aa)
Putative ABC-type transport system, periplasmic component/surface lipoprotein n=1 Tax=Gordonia sp. KTR9 RepID=J9S3T1_9ACTO
Lipoprotein {ECO:0000313|EMBL:KHL17222.1}; TaxID=1348852 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Mumia.;" source="Mumia flava.;"
putative ABC-type transport system, periplasmic component/surface lipoprotein
S3-16-all-fractions_k255_4132111_7
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

6483..8012
DNA (1530bp) protein (510aa)
hypothetical protein n=1 Tax=Alicyclobacillus pohliae RepID=UPI00036E7875
yufO; hypothetical protein
Tax=RBG_16_RIF_CHLX_69_14_curated
S3-16-all-fractions_k255_4132111_8
RBG_16_Chloroflexi_52_11_curated, Chloroflexi, Bacteria

Not on your lists

8009..9106
DNA (1098bp) protein (366aa)
Inner-membrane translocator n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AQK7_9CLOT
ABC transporter permease
Tax=RBG_16_Chloroflexi_52_11_curated
S3-16-all-fractions_k255_4132111_9
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9106..10191
DNA (1086bp) protein (362aa)
ABC transporter permease n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FI05_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:ESX71564.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
putative ABC-type transport system permease component
S3-16-all-fractions_k255_4132111_10
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

10231..11910
DNA (1680bp) protein (560aa)
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] id=24406842 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
Sbm; methylmalonyl-CoA mutase N-terminal domain-containing protein
Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
S3-16-all-fractions_k255_4132111_11
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11913..12320
DNA (408bp) protein (136aa)
Methylmalonyl-CoA epimerase {ECO:0000313|EMBL:ERH10526.1}; EC=5.1.99.1 {ECO:0000313|EMBL:ERH10526.1};; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
methylmalonyl-CoA epimerase id=24649431 bin=uncultivated_archaeon_J07ABHX6 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultivated_archaeon_J07ABHX6
methylmalonyl-CoA epimerase
S3-16-all-fractions_k255_4132111_12
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

12317..13726
DNA (1410bp) protein (470aa)
Dihydropyrimidinase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P5Q8_9FIRM
hyuA; D-hydantoinase
Tax=GWC2_Gemmatimonadetes_71_10_curated
S3-16-all-fractions_k255_4132111_13
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

13723..14871
DNA (1149bp) protein (383aa)
L-carnitine dehydratase/bile acid-inducible protein F (EC:2.8.3.16)
L-carnitine dehydratase/bile acid-inducible protein F id=14631916 bin=bin9_gal15 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
Tax=CSP1_3_Armatimonadetes
S3-16-all-fractions_k255_4132111_14
R_Elusimicrobia_57_9, Elusimicrobia, Bacteria

Not on your lists

14855..16336
DNA (1482bp) protein (494aa)
Hydroxydechloroatrazine ethylaminohydrolase id=2319572 bin=GWA2_Elusimicrobia_66_18 species=Candidatus Puniceispirillum marinum genus=Candidatus Puniceispirillum taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
Cytosine deaminase and related metal-dependent hydrolase
Tax=RIFCSPHIGHO2_02_FULL_Elusimicrobia_57_9_curated
S3-16-all-fractions_k255_4132111_15
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16333..17679
DNA (1347bp) protein (449aa)
S-adenosylhomocysteine deaminase n=1 Tax=Halobacterium sp. DL1 RepID=G4IFW8_9EURY
amidohydrolase family protein
Tax=RBG_16_Deltaproteobacteria_48_10_curated
S3-16-all-fractions_k255_4132111_16
R_NC10_66_22, NC10, Bacteria

Not on your lists

17698..18375
DNA (678bp) protein (226aa)
GntR family transcriptional regulator n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFDADF
GntR family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
S3-16-all-fractions_k255_4132111_17
RHI_Planctomycetes_52_36, Planctomycetes, Bacteria

Not on your lists

18372..18926
DNA (555bp) protein (185aa)
Orotate phosphoribosyltransferase n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3J4G8_FRASU
orotate phosphoribosyltransferase
Tax=RIFCSPHIGHO2_12_FULL_Planctomycetes_52_36_curated
S3-16-all-fractions_k255_4132111_18
Streptomyces niveus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18923..20182
DNA (1260bp) protein (420aa)
allantoate deiminase (EC:3.5.3.9)
hypothetical protein n=1 Tax=Streptomyces sp. CNS335 RepID=UPI00037279ED
Uncharacterized protein {ECO:0000313|EMBL:EST26802.1}; TaxID=1352941 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces niveus NCIMB 11891.;"
S3-16-all-fractions_k255_4132111_19
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20195..20983
DNA (789bp) protein (263aa)
Short chain dehydrogenase {ECO:0000313|EMBL:ABK74744.1}; Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AFP40359.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AFP40359.1};; TaxID=246196 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155).;"
Short chain dehydrogenase n=1 Tax=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) RepID=A0QZE2_MYCS2
short-chain dehydrogenase
S3-16-all-fractions_k255_4132111_20
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

20992..21450
DNA (459bp) protein (153aa)
Cobalamin B12-binding domain protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F959_CONWI
cobalamin B12-binding domain-containing protein
Cobalamin B12-binding domain protein {ECO:0000313|EMBL:ADB53054.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
S3-16-all-fractions_k255_4132111_21
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

21447..22739
DNA (1293bp) protein (431aa)
Glutamate dehydrogenase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F4P9_CONWI
Glu/Leu/Phe/Val dehydrogenase
Glu/Leu/Phe/Val dehydrogenase dimerization region {ECO:0000313|EMBL:ADB52506.1}; Flags: Precursor;; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
S3-16-all-fractions_k255_4132111_22
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

23148..23780
DNA (633bp) protein (211aa)
Tax=RBG_16_Actinobacteria_68_12_curated
S3-16-all-fractions_k255_4132111_23
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(24069..25214)
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EFZ2_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:CCF83604.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
hypothetical protein
S3-16-all-fractions_k255_4132111_24
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25253..25684
DNA (432bp) protein (144aa)
Putative endoribonuclease n=3 Tax=Bordetella bronchiseptica RepID=K4QP23_BORBO
endoribonuclease
Putative endoribonuclease {ECO:0000313|EMBL:CCN25292.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
S3-16-all-fractions_k255_4132111_25
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25746..26849
DNA (1104bp) protein (368aa)
Flavodoxin reductase family protein n=1 Tax=Rhodococcus ruber BKS 20-38 RepID=M2XMI7_9NOCA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHH99320.1}; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
S3-16-all-fractions_k255_4132111_26
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26872..28029
DNA (1158bp) protein (386aa)
Fatty acid desaturase n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SMY2_NOCSJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHH99319.1}; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
S3-16-all-fractions_k255_4132111_27
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(28081..28518)
DNA (438bp) protein (146aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1280514 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidithrix.;" source="Acidithrix ferrooxidans.;"
Ribonuclease VapC n=1 Tax=Mycobacterium canettii CIPT 140070008 RepID=L0Q758_9MYCO
Conserved protein of unknown function, PIN domain protein family protein
S3-16-all-fractions_k255_4132111_28
Mycobacterium bovis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28518..28766)
DNA (249bp) protein (83aa)
DNA-binding protein, CopG family n=63 Tax=Mycobacterium tuberculosis complex RepID=Q7D7H3_MYCTU
CopG family DNA-binding protein
DNA-binding protein, CopG family {ECO:0000313|EMBL:CEJ40623.1}; TaxID=1765 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex.;" source="Mycobacterium bovis.;"
S3-16-all-fractions_k255_4132111_29
unknown

Not on your lists

comp(28839..29057)
DNA (219bp) protein (73aa)

This feature has no annotations

S3-16-all-fractions_k255_4132111_30
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

29373..30944
DNA (1572bp) protein (524aa)
hypothetical protein n=1 Tax=Patulibacter americanus RepID=UPI0003B5F351
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADB52686.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Displaying 30 items

View Taxonomy