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S3-16-all-fractions_k255_5613405

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S3-16-all-fractions_k255_5613405_1
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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1..360
DNA (360bp) protein (120aa)
ATPase subunit H n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AW91_RUBXD
ATPase subunit H
Uncharacterized protein {ECO:0000313|EMBL:AHY46663.1}; TaxID=42256 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
S3-16-all-fractions_k255_5613405_2
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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380..838
DNA (459bp) protein (153aa)
Putative uncharacterized protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AW90_RUBXD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG04338.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
S3-16-all-fractions_k255_5613405_3
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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865..1047
DNA (183bp) protein (61aa)
50S ribosomal protein L32 n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=RL32_RUBXD
rpmF; 50S ribosomal protein L32
50S ribosomal protein L32 {ECO:0000255|HAMAP-Rule:MF_00340}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
S3-16-all-fractions_k255_5613405_4
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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1067..2074
DNA (1008bp) protein (336aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=42256 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
Phosphate acyltransferase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=PLSX_RUBXD
plsX: fatty acid/phospholipid synthesis protein PlsX
S3-16-all-fractions_k255_5613405_5
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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2071..3018
DNA (948bp) protein (316aa)
3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000255|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000255|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000255|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000255|HAMAP-Rule:MF_01815}; Short=KAS III {ECO:0000255|HAMAP-Rule:MF_01815};; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=FABH_RUBXD
S3-16-all-fractions_k255_5613405_6
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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3020..3847
DNA (828bp) protein (276aa)
Acyl transferase region n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AW86_RUBXD
(acyl-carrier-protein) S-malonyltransferase
Acyl transferase region {ECO:0000313|EMBL:ABG04342.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
S3-16-all-fractions_k255_5613405_7
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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3844..4293
DNA (450bp) protein (150aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase (EC:4.2.1.-)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000255|HAMAP-Rule:MF_00406}; EC=4.2.1.59 {ECO:0000255|HAMAP-Rule:MF_00406};; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase {ECO:0000255|HAMAP-Rule:MF_00406}; Short=(3R)-hydroxymyristoyl-ACP dehydrase {ECO:0000255|HAMAP-Rule:MF_00406};; Beta-hydroxyacyl-ACP dehydratase {ECO:0000255|HAMAP-Rule:MF_00406}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=FABZ_RUBXD
S3-16-all-fractions_k255_5613405_8
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

4290..5036
DNA (747bp) protein (249aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:ABG04344.1}; EC=1.1.1.100 {ECO:0000313|EMBL:ABG04344.1};; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
3-oxoacyl-[acyl-carrier-protein] reductase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AW84_RUBXD
S3-16-all-fractions_k255_5613405_9
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

5116..5361
DNA (246bp) protein (82aa)
Acyl carrier protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=ACP_RUBXD
acyl carrier protein
Acyl carrier protein {ECO:0000255|HAMAP-Rule:MF_01217}; Short=ACP {ECO:0000255|HAMAP-Rule:MF_01217};; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
S3-16-all-fractions_k255_5613405_10
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

5358..6614
DNA (1257bp) protein (419aa)
3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AW82_RUBXD
S3-16-all-fractions_k255_5613405_11
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

6623..7282
DNA (660bp) protein (220aa)
RNAse III (EC:3.1.26.3)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
Ribonuclease 3 n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AW81_RUBXD
S3-16-all-fractions_k255_5613405_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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7575..8336
DNA (762bp) protein (254aa)
Trehalose 6-phosphatase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EF97_9SPHN
beta-phosphoglucomutase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
S3-16-all-fractions_k255_5613405_13
Rhodococcus ruber, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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8352..9161
DNA (810bp) protein (270aa)
Trehalose 6-phosphate phosphatase {ECO:0000256|RuleBase:RU361117}; EC=3.1.3.12 {ECO:0000256|RuleBase:RU361117};; TaxID=1830 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus ruber.;"
haloacid dehalogenase n=1 Tax=Rhodococcus RepID=UPI00029B503E
T6PP: trehalose-phosphatase
S3-16-all-fractions_k255_5613405_14
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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9161..11596
DNA (2436bp) protein (812aa)
Glycoside hydrolase family 65 central catalytic n=1 Tax=Rhodococcus pyridinivorans AK37 RepID=H0JRA2_9NOCA
Trehalose and maltose hydrolases (Possible phosphorylases) {ECO:0000313|EMBL:AHY48321.1}; TaxID=42256 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
Trehalose and maltose hydrolases (possible phosphorylases)
S3-16-all-fractions_k255_5613405_15
RLO_PLX_64_10, Bacteria

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11893..13032
DNA (1140bp) protein (380aa)
galactonate dehydratase n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B4CB29
galactonate dehydratase
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
S3-16-all-fractions_k255_5613405_16
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

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13407..14435
DNA (1029bp) protein (343aa)
Metallophosphoesterase/PKD domain protein n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D975_MYXXD
metallophosphoesterase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
S3-16-all-fractions_k255_5613405_17
unknown

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14630..14803
DNA (174bp) protein (58aa)

This feature has no annotations

S3-16-all-fractions_k255_5613405_18
unknown

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14915..15214
DNA (300bp) protein (100aa)

This feature has no annotations

S3-16-all-fractions_k255_5613405_19
Thermobaculum terrenum, Thermobaculum, Bacteria

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15405..17144
DNA (1740bp) protein (580aa)
ATP-dependent DNA ligase I (EC:6.5.1.1)
Probable DNA ligase {ECO:0000256|HAMAP-Rule:MF_00407}; EC=6.5.1.1 {ECO:0000256|HAMAP-Rule:MF_00407};; Polydeoxyribonucleotide synthase [ATP] {ECO:0000256|HAMAP-Rule:MF_00407}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
Probable DNA ligase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CBZ1_THET1
S3-16-all-fractions_k255_5613405_20
Thermobaculum terrenum, Thermobaculum, Bacteria

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comp(17161..18969)
DNA (1809bp) protein (603aa)
DNA polymerase I (EC:2.7.7.7)
DNA polymerase I {ECO:0000313|EMBL:ACZ41682.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ACZ41682.1};; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
DNA polymerase I n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CFH6_THET1
S3-16-all-fractions_k255_5613405_21
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

19203..22496
DNA (3294bp) protein (1098aa)
SMC protein-like protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AW80_RUBXD
SMC protein-like protein {ECO:0000313|EMBL:ABG04348.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
SMC protein-like protein
S3-16-all-fractions_k255_5613405_22
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

22507..23721
DNA (1215bp) protein (405aa)
Signal recognition particle receptor FtsY n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AW79_RUBXD
ftsY: signal recognition particle-docking protein FtsY
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=42256 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
S3-16-all-fractions_k255_5613405_23
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists


23722..25053
DNA (1332bp) protein (444aa)
Signal recognition particle protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AW78_RUBXD
signal recognition particle subunit FFH/SRP54 (srp54)
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
S3-16-all-fractions_k255_5613405_24
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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25072..25314
DNA (243bp) protein (81aa)
30S ribosomal protein S16 n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=RS16_RUBXD
30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000255|HAMAP-Rule:MF_00385}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
S3-16-all-fractions_k255_5613405_25
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

25321..25560
DNA (240bp) protein (80aa)
UPF0109 protein Rxyl_1389 n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AW76_RUBXD
putative RNA-binding protein (contains KH domain)
UPF0109 protein RradSPS_1395 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=42256 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
S3-16-all-fractions_k255_5613405_26
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

25566..26066
DNA (501bp) protein (167aa)
Ribosome maturation factor RimM n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=RIMM_RUBXD
16S rRNA processing protein RimM
Ribosome maturation factor RimM {ECO:0000255|HAMAP-Rule:MF_00014}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
S3-16-all-fractions_k255_5613405_27
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

26067..26759
DNA (693bp) protein (231aa)
tRNA (Guanine37-N(1)-) methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AW74_RUBXD
S3-16-all-fractions_k255_5613405_28
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists


26793..27119
DNA (327bp) protein (109aa)
50S ribosomal protein L19 n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=RL19_RUBXD
ribosomal protein L19
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=42256 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
S3-16-all-fractions_k255_5613405_29
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

27133..27639
DNA (507bp) protein (169aa)
RNase HII (EC:3.1.26.4)
Ribonuclease {ECO:0000256|RuleBase:RU003515}; EC=3.1.26.- {ECO:0000256|RuleBase:RU003515};; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
Ribonuclease n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AW72_RUBXD
Displaying 29 items

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