ggKbase home page

S3-18-all-fractions_k255_3502455

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S3-18-all-fractions_k255_3502455_1
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..761)
DNA (759bp) protein (253aa)
Peptidase M28 n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LMN3_SYNFM
Uncharacterized protein {ECO:0000313|EMBL:KFE62228.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
peptidase M28
S3-18-all-fractions_k255_3502455_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(1053..3692)
DNA (2640bp) protein (880aa)
Uncharacterized protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U4L1_MYXSD
permease
Permease {ECO:0000313|EMBL:AHG93247.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
S3-18-all-fractions_k255_3502455_3
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3694..4026)
DNA (333bp) protein (111aa)
PadR family transcriptional regulator n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UMM3_MYXSD
PadR family transcriptional regulator
PadR family transcriptional regulator {ECO:0000313|EMBL:AGC49135.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
S3-18-all-fractions_k255_3502455_4
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4225..5793
DNA (1569bp) protein (523aa)
Dienelactone hydrolase-like enzyme n=1 Tax=Caulobacter sp. AP07 RepID=J2GVZ2_9CAUL
Dienelactone hydrolase-like enzyme {ECO:0000313|EMBL:EJL27058.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
beta-lactamase
S3-18-all-fractions_k255_3502455_5
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

5817..6893
DNA (1077bp) protein (359aa)
Histidine kinase family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JKP7_9BACT
Histidine kinase family {ECO:0000313|EMBL:EDY81327.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
histidine kinase internal region
S3-18-all-fractions_k255_3502455_6
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

6872..7624
DNA (753bp) protein (251aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FWF0_STIAD
LyTR family two component transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
S3-18-all-fractions_k255_3502455_7
unknown

Not on your lists

7636..8154
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2D548
S3-18-all-fractions_k255_3502455_8
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8160..9734)
DNA (1575bp) protein (525aa)
Peptidase dimerisation domain protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V4R7_SPHWW
peptidase dimerisation domain-containing protein
Peptidase dimerisation domain protein {ECO:0000313|EMBL:ABQ67283.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
S3-18-all-fractions_k255_3502455_9
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

9748..10782
DNA (1035bp) protein (345aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01T96_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ87124.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
S3-18-all-fractions_k255_3502455_10
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

10782..11546
DNA (765bp) protein (255aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01XV7_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ85508.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
S3-18-all-fractions_k255_3502455_11
unknown

Not on your lists

11761..12156
DNA (396bp) protein (132aa)

This feature has no annotations

S3-18-all-fractions_k255_3502455_12
Cellvibrio japonicus, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12257..13003
DNA (747bp) protein (249aa)
ubiquinone/menaquinone biosynthesis methlytransferase UbiE (EC:2.1.1.-)
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; EC=2.1.1.201 {ECO:0000256|HAMAP-Rule:MF_01813};; 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase {ECO:0000256|HAMAP-Rule:MF_01813}; Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; TaxID=498211 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cellvibrio japonicus (strain Ueda107) (Pseudomonas fluorescens subsp.; cellulosa).;"
Ubiquinone/menaquinone biosynthesis methlytransferase UbiE n=1 Tax=Cellvibrio japonicus (strain Ueda107) RepID=B3PFI6_CELJU
S3-18-all-fractions_k255_3502455_13
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13023..13355)
DNA (333bp) protein (111aa)
Conserved uncharacterized protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08UL5_STIAD
hypothetical protein
Conserved uncharacterized protein {ECO:0000313|EMBL:ADO68963.1}; Uncharacterized protein {ECO:0000313|EMBL:EAU64172.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
S3-18-all-fractions_k255_3502455_14
unknown

Not on your lists

comp(13452..14075)
DNA (624bp) protein (208aa)

This feature has no annotations

S3-18-all-fractions_k255_3502455_15
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14112..14918)
DNA (807bp) protein (269aa)
Metallophosphoesterase n=2 Tax=Nitrosococcus oceani RepID=Q3JBN5_NITOC
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:ABA57761.1}; TaxID=323261 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848).;"
S3-18-all-fractions_k255_3502455_16
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(14989..15270)
DNA (282bp) protein (94aa)
Tax=RBG_13_Acidobacteria_68_16_curated
S3-18-all-fractions_k255_3502455_17
Bartonella vinsonii, Bartonella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15376..15768)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Bartonella vinsonii subsp. arupensis Pm136co RepID=J0RGW0_BARVI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ENN92948.1}; TaxID=1094502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella.;" source="Bartonella vinsonii subsp. berkhoffii str. Tweed.;"
S3-18-all-fractions_k255_3502455_18
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15919..17316
DNA (1398bp) protein (466aa)
Beta-lactamase domain protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8J990_ANAD2
beta-lactamase domain-containing protein
Beta-lactamase domain protein {ECO:0000313|EMBL:ACL65496.1}; TaxID=455488 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258).;"
S3-18-all-fractions_k255_3502455_19
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17310..18599
DNA (1290bp) protein (430aa)
UPF0761 membrane protein Nmul_A0452 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Y452_NITMU
ribonuclease BN
UPF0761 membrane protein Nmul_A0452 {ECO:0000255|HAMAP-Rule:MF_00672}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
S3-18-all-fractions_k255_3502455_20
Thermococcus kodakarensis, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(18746..19219)
DNA (474bp) protein (158aa)
Predicted nucleic acid-binding protein, containing PIN domain n=1 Tax=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=Q5JHG8_THEKO
nucleic acid-binding protein
Predicted nucleic acid-binding protein, containing PIN domain {ECO:0000313|EMBL:BAD86344.1}; TaxID=69014 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1); (Pyrococcus kodakaraensis (strain KOD1)).;"
S3-18-all-fractions_k255_3502455_21
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(19238..19627)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I5B7_CALAS
hypothetical protein
Tax=CG_Anaero_02
S3-18-all-fractions_k255_3502455_22
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

19835..20158
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=Oscillatoria sp. PCC 6506 RepID=D8G8T8_9CYAN
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
S3-18-all-fractions_k255_3502455_23
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20155..20352
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=uncultured Desulfofustis sp. PB-SRB1 RepID=V4JCW6_9DELT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
S3-18-all-fractions_k255_3502455_24
unknown

Not on your lists

20363..20563
DNA (201bp) protein (67aa)

This feature has no annotations

S3-18-all-fractions_k255_3502455_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20514..21686)
DNA (1173bp) protein (391aa)
hypothetical protein n=1 Tax=Acidovorax radicis RepID=UPI0002376970
Variovorax paradoxus strain MEDvA23 contig_135, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ16299.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
S3-18-all-fractions_k255_3502455_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21640..24297)
DNA (2658bp) protein (886aa)
hypothetical protein n=1 Tax=Acidovorax radicis RepID=UPI0002376971
Variovorax paradoxus strain MEDvA23 contig_135, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ16300.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
S3-18-all-fractions_k255_3502455_27
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(24495..25859)
DNA (1365bp) protein (455aa)
Uncharacterized protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZF43_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EAY31145.1}; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
hypothetical protein
S3-18-all-fractions_k255_3502455_28
Fischerella sp. JSC-11, Fischerella, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

26058..27230
DNA (1173bp) protein (391aa)
hypothetical protein n=1 Tax=Fischerella thermalis RepID=UPI00035C7437
PEP motif putative anchor domain protein {ECO:0000313|EMBL:EHC18745.1}; Flags: Precursor;; TaxID=741277 species="Bacteria; Cyanobacteria; Stigonematales; Fischerella.;" source="Fischerella sp. JSC-11.;"
hypothetical protein
S3-18-all-fractions_k255_3502455_29
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27242..28204)
DNA (963bp) protein (321aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Frankia sp. (strain EAN1pec) RepID=A8LDU8_FRASN
short chain dehydrogenase
Tax=RBG_16_Anaeromyxobacter_69_14_curated
S3-18-all-fractions_k255_3502455_30
unknown

Not on your lists

28406..28939
DNA (534bp) protein (178aa)

This feature has no annotations

Displaying items 1-30 of 32 in total

View Taxonomy