ggKbase home page

S3-18-all-fractions_k255_152147

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S3-18-all-fractions_k255_152147_1
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(3..968)
DNA (966bp) protein (322aa)
HEAT repeat-containing protein n=1 Tax=Fervidobacterium pennivorans (strain DSM 9078 / Ven5) RepID=H9UE25_FERPD
HEAT repeat-containing protein
Tax=RBG_16_Acidobacteria_70_10_curated
S3-18-all-fractions_k255_152147_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(965..1405)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035C5718
hypothetical protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
S3-18-all-fractions_k255_152147_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

1513..2253
DNA (741bp) protein (247aa)
metallophosphoesterase; K03269 UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] id=24407690 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Calcineurin-like phosphoesterase superfamily domain protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
S3-18-all-fractions_k255_152147_4
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(2270..3070)
DNA (801bp) protein (267aa)
Glutamate racemase
Glutamate racemase id=4937759 bin=GWC2_Geobacteraceae_55_20 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
Tax=GWC2_Gemmatimonadetes_71_10_curated
S3-18-all-fractions_k255_152147_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3067..3720)
DNA (654bp) protein (218aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
S3-18-all-fractions_k255_152147_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3724..4116)
DNA (393bp) protein (131aa)
Endoribonuclease L-PSP family protein n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3A9D0_CARHZ
endoribonuclease L-PSP
Tax=RBG_16_Gemmatimonadetes_66_8_curated
S3-18-all-fractions_k255_152147_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(4116..5789)
DNA (1674bp) protein (558aa)
fhs; formate--tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AE57_GEMAT
Tax=RBG_16_Gemmatimonadetes_66_8_curated
S3-18-all-fractions_k255_152147_8
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(5839..6498)
DNA (660bp) protein (220aa)
putative DNase (EC:3.1.21.-)
Putative DNase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8P4_GEMAT
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
S3-18-all-fractions_k255_152147_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(6612..7643)
DNA (1032bp) protein (344aa)
Protein translocase subunit SecF n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=SECF_GEMAT
SecF protein
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
S3-18-all-fractions_k255_152147_10
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(7643..9373)
DNA (1731bp) protein (577aa)
Protein translocase subunit SecD n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=SECD_GEMAT
SecD export membrane protein
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
S3-18-all-fractions_k255_152147_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(9417..10361)
DNA (945bp) protein (315aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Riboflavin kinase/FMN adenylyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8P1_GEMAT
riboflavin biosynthesis protein RibF
S3-18-all-fractions_k255_152147_12
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(10358..11158)
DNA (801bp) protein (267aa)
tRNA pseudouridine synthase B (EC:4.2.1.70)
tRNA pseudouridine synthase B id=4047560 bin=GWC2_Nitrospirae_57_13 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
S3-18-all-fractions_k255_152147_13
Desulfotomaculum ruminis, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11209..11568)
DNA (360bp) protein (120aa)
Ribosome-binding factor A n=1 Tax=Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) RepID=F6DUM1_DESRL
ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=696281 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 /; DL).;"
S3-18-all-fractions_k255_152147_14
BJP_IG2103_ACD39_50_23, ACD39, Bacteria

Not on your lists

comp(11565..11846)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC A-0304 / NBRC 14216 / KM-6054) RepID=E4NHV4_KITSK
hypothetical protein
Tax=BJP_IG2103_ACD39_50_23
S3-18-all-fractions_k255_152147_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(11872..14613)
DNA (2742bp) protein (914aa)
Translation initiation factor IF-2 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N8_GEMAT
initiation factor 2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
S3-18-all-fractions_k255_152147_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(14626..14931)
DNA (306bp) protein (102aa)
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N7_GEMAT
ribosomal protein L7Ae/L30e/S12e/Gadd45
Ribosomal protein L7Ae/L30e/S12e/Gadd45 {ECO:0000313|EMBL:AHG90724.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
S3-18-all-fractions_k255_152147_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(14928..16250)
DNA (1323bp) protein (441aa)
Transcription elongation protein NusA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N6_GEMAT
nusA; transcription elongation protein NusA
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
S3-18-all-fractions_k255_152147_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(16262..16744)
DNA (483bp) protein (161aa)
Ribosome maturation factor RimP n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RIMP_GEMAT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
S3-18-all-fractions_k255_152147_19
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(16898..17659)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N4_GEMAT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
S3-18-all-fractions_k255_152147_20
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(17678..18961)
DNA (1284bp) protein (428aa)
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N3_GEMAT
Tax=RBG_16_Gemmatimonadetes_66_8_curated
S3-18-all-fractions_k255_152147_21
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

19090..19569
DNA (480bp) protein (160aa)
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
S3-18-all-fractions_k255_152147_22
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

19569..20537
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N1_GEMAT
phospholipase C/P1 nuclease
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
S3-18-all-fractions_k255_152147_23
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

20477..21508
DNA (1032bp) protein (344aa)
Putative M23B family peptidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6X7_GEMAT
putative M23B family peptidase
Putative M23B family peptidase {ECO:0000313|EMBL:BAH37987.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
S3-18-all-fractions_k255_152147_24
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(21531..22961)
DNA (1431bp) protein (477aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N0_GEMAT
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
S3-18-all-fractions_k255_152147_25
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(22961..24364)
DNA (1404bp) protein (468aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CUF3_9CLOT
Glutamyl-tRNA(Gln) amidotransferase subunit A
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
S3-18-all-fractions_k255_152147_26
Desulfitobacterium metallireducens, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24361..24660)
DNA (300bp) protein (100aa)
gatC; glutamyl-tRNA amidotransferase subunit C (EC:6.3.5.6 6.3.5.7)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=871968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium metallireducens DSM 15288.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GDN4_9FIRM
S3-18-all-fractions_k255_152147_27
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(24657..26942)
DNA (2286bp) protein (762aa)
ATP-dependent DNA helicase (EC:3.6.1.-)
ATP-dependent DNA helicase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8M7_GEMAT
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
S3-18-all-fractions_k255_152147_28
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(26939..28066)
DNA (1128bp) protein (376aa)
Two-component histidine kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8M6_GEMAT
two-component histidine kinase
Tax=GWC2_Gemmatimonadetes_71_10_curated
S3-18-all-fractions_k255_152147_29
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(28095..29378)
DNA (1284bp) protein (428aa)
Serine--tRNA ligase n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6QDI4_9FIRM
Seryl-tRNA synthetase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
S3-18-all-fractions_k255_152147_30
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(29381..29935)
DNA (555bp) protein (185aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Displaying items 1-30 of 32 in total

View Taxonomy