ggKbase home page

S3-18-all-fractions_k255_5970807

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S3-18-all-fractions_k255_5970807_1
Rhodobacter sp. AKP1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..496
DNA (495bp) protein (165aa)
Glycosyltransferase n=1 Tax=Rhodobacter sp. AKP1 RepID=L1K6L4_9RHOB
Glycosyltransferase {ECO:0000313|EMBL:EKX56013.1}; TaxID=1247725 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. AKP1.;"
hypothetical protein
S3-18-all-fractions_k255_5970807_2
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

496..1602
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5J3_RAMTT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIE86686.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
S3-18-all-fractions_k255_5970807_3
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1599..2699
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5J2_RAMTT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG92688.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
S3-18-all-fractions_k255_5970807_4
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2696..3496
DNA (801bp) protein (267aa)
Methyltransferase type 11 n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M4D6_GEODF
methyltransferase type 11
Tax=GWC2_Geobacteraceae_58_44_curated
S3-18-all-fractions_k255_5970807_5
GWA2_Deltaproteobacteria_55_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3517..5286
DNA (1770bp) protein (590aa)
Uncharacterized protein id=4841719 bin=GWC2_Deltaproteobacteria_55_46 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
hypothetical protein
Tax=GWA2_Deltaproteobacteria_55_10_curated
S3-18-all-fractions_k255_5970807_6
Vibrio campbellii, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5279..5809
DNA (531bp) protein (177aa)
D,D-heptose 1,7-bisphosphate phosphatase {ECO:0000256|PIRNR:PIRNR004682}; EC=3.1.3.- {ECO:0000256|PIRNR:PIRNR004682};; TaxID=1224742 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio campbellii CAIM 519 = NBRC 15631.;"
HAD hydrolase, IA, variant 1 family protein n=1 Tax=Vibrio parahaemolyticus VP2007-095 RepID=T5FW44_VIBPH
D,D-heptose 1,7-bisphosphate phosphatase
S3-18-all-fractions_k255_5970807_7
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5823..6710)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GTL2_SORC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN96961.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
S3-18-all-fractions_k255_5970807_8
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

6821..7441
DNA (621bp) protein (207aa)
Phosphoglycerate mutase n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B2X3_HERA2
phosphoglycerate mutase
Phosphoglycerate mutase {ECO:0000313|EMBL:ABX06036.1}; TaxID=316274 species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
S3-18-all-fractions_k255_5970807_9
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7653..9443
DNA (1791bp) protein (597aa)
ABC transporter related n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M9D5_GEODF
ABC transporter
ABC transporter, ATP-binding/membrane protein {ECO:0000313|EMBL:ACM18693.1}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
S3-18-all-fractions_k255_5970807_10
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9454..9963)
DNA (510bp) protein (170aa)
hypothetical protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
S3-18-all-fractions_k255_5970807_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(9974..11185)
DNA (1212bp) protein (404aa)
aspC; aspartate aminotransferase (EC:2.6.1.1)
Aspartate aminotransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6F2_GEMAT
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
S3-18-all-fractions_k255_5970807_12
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

11365..12801
DNA (1437bp) protein (479aa)
ATP-dependent RNA helicase, Cold-shock DEAD box protein A n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RV05_BLASD
DbpA RNA-binding domain protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
S3-18-all-fractions_k255_5970807_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(12813..13103)
DNA (291bp) protein (97aa)
DNA-binding protein n=1 Tax=Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316) RepID=E0S441_BUTPB
DNA-binding protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
S3-18-all-fractions_k255_5970807_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

13242..13847
DNA (606bp) protein (202aa)
tdk; thymidine kinase (EC:2.7.1.21)
Thymidine kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6F0_GEMAT
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
S3-18-all-fractions_k255_5970807_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

13981..14580
DNA (600bp) protein (200aa)
coaE; dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6E7_GEMAT
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
S3-18-all-fractions_k255_5970807_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

14637..15026
DNA (390bp) protein (130aa)
Glycine cleavage system H protein n=2 Tax=Rothia aeria RepID=I0UU16_9MICC
Glycine cleavage system H protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
S3-18-all-fractions_k255_5970807_17
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

15167..18070
DNA (2904bp) protein (968aa)
gcvP; glycine dehydrogenase (EC:1.4.4.2)
Glycine dehydrogenase (decarboxylating) n=1 Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GJB5_9CYAN
Tax=GWC2_Gemmatimonadetes_71_10_curated
S3-18-all-fractions_k255_5970807_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

18063..18821
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6E4_GEMAT
biotin/lipoate A/B protein ligase
Tax=RBG_16_Gemmatimonadetes_66_8_curated
S3-18-all-fractions_k255_5970807_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

18874..20523
DNA (1650bp) protein (550aa)
Putative peptide ABC transporter substrate binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6E3_GEMAT
ABC-type transporter, periplasmic subunit
Tax=RBG_16_Gemmatimonadetes_66_8_curated
S3-18-all-fractions_k255_5970807_20
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

20526..21497
DNA (972bp) protein (324aa)
peptide ABC transporter permease n=1 Tax=Thermodesulfatator atlanticus RepID=UPI0003B4402B
binding-protein-dependent transport systems inner membrane component
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
S3-18-all-fractions_k255_5970807_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

21494..22333
DNA (840bp) protein (280aa)
ABC-type transporter, integral membrane subunit
Oligopeptide transport system permease protein id=1835592 bin=GWB2_Nitrospirae_rel_47_37 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
S3-18-all-fractions_k255_5970807_22
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

22330..23346
DNA (1017bp) protein (339aa)
Putative peptide ABC transporter ATP-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6E0_GEMAT
putative peptide ABC transporter ATP-binding protein
Putative peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAH37800.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
S3-18-all-fractions_k255_5970807_23
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

23343..24359
DNA (1017bp) protein (339aa)
hypothetical protein n=1 Tax=Orenia marismortui RepID=UPI00036958AF
oligopeptide/dipeptide ABC transporter, ATPase subunit
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
S3-18-all-fractions_k255_5970807_24
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

24499..24720
DNA (222bp) protein (74aa)
CsbD family protein n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QGG1_BRESC
CsbD family protein
CsbD family protein {ECO:0000313|EMBL:AHG87774.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
S3-18-all-fractions_k255_5970807_25
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(24785..25642)
DNA (858bp) protein (286aa)
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A543_GEMAT
fliA; RNA polymerase sigma factor for flagellar operon
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
S3-18-all-fractions_k255_5970807_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(25887..26993)
DNA (1107bp) protein (369aa)
Two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4T1_GEMAT
response regulator receiver
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
S3-18-all-fractions_k255_5970807_27
unknown

Not on your lists

27251..27427
DNA (177bp) protein (59aa)

This feature has no annotations

S3-18-all-fractions_k255_5970807_28
RBG_13_Chloroflexi_66_10_curated, Chloroflexi, Bacteria

Not on your lists

27441..27827
DNA (387bp) protein (129aa)
Putative Endoribonuclease L-PSP, YjgF-like n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P9C9_9BACT
endoribonuclease L-PSP
Tax=RBG_13_Chloroflexi_66_10_curated
S3-18-all-fractions_k255_5970807_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

27824..28117
DNA (294bp) protein (98aa)
Phenazine biosynthesis protein PhzF family n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WJG8_9CYAN
phenazine biosynthesis protein PhzF family protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 29 items

View Taxonomy