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04302015_24_scaffold_456

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Displaying items 1-30 of 33 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_24_scaffold_456_1
unknown

Not on your lists

1..81
DNA (81bp) protein (27aa)

This feature has no annotations

04302015_24_scaffold_456_2
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(219..404)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. CF318 RepID=J3D0E9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL81971.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
hypothetical protein
04302015_24_scaffold_456_3
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(482..1339)
DNA (858bp) protein (286aa)
cystathionine beta-lyase; K01760 cystathionine beta-lyase [EC:4.4.1.8]
Cystathionine beta-lyase {ECO:0000313|EMBL:ABM37195.1}; EC=4.4.1.8 {ECO:0000313|EMBL:ABM37195.1};; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
Cystathionine beta-lyase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VNG7_POLNA
04302015_24_scaffold_456_4
unknown

Not on your lists

1374..1943
DNA (570bp) protein (190aa)

This feature has no annotations

04302015_24_scaffold_456_5
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1895..2419)
DNA (525bp) protein (175aa)
Phosphoribosyltransferase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VNG6_POLNA rbh
phosphoribosyltransferase; K07101 rbh
Phosphoribosyltransferase {ECO:0000313|EMBL:ABM37194.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
04302015_24_scaffold_456_6
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2499..3839)
DNA (1341bp) protein (447aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
adenylosuccinate synthetase (EC:6.3.4.4); K01939 adenylosuccinate synthase [EC:6.3.4.4]
Adenylosuccinate synthetase n=1 Tax=Polaromonas sp. CF318 RepID=J2L9V2_9BURK
04302015_24_scaffold_456_7
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3938..5128)
DNA (1191bp) protein (397aa)
ATP phosphoribosyltransferase regulatory subunit n=1 Tax=Polaromonas sp. CF318 RepID=J2TT95_9BURK rbh
ATP phosphoribosyltransferase regulatory subunit {ECO:0000256|HAMAP-Rule:MF_00125, ECO:0000256|SAAS:SAAS00089029}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
class II tRNA synthetase; K02502 ATP phosphoribosyltransferase regulatory subunit
04302015_24_scaffold_456_8
unknown

Not on your lists

5379..5552
DNA (174bp) protein (58aa)

This feature has no annotations

04302015_24_scaffold_456_9
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5488..6402)
DNA (915bp) protein (305aa)
HflC protein; K04087 membrane protease subunit HflC [EC:3.4.-.-] rbh
Protein HflC n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VNG2_POLNA rbh
Protein HflC {ECO:0000256|PIRNR:PIRNR005651}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
04302015_24_scaffold_456_10
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6414..7823)
DNA (1410bp) protein (470aa)
HflK protein; K04088 membrane protease subunit HflK [EC:3.4.-.-] rbh
Protease FtsH subunit HflK n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12AC5_POLSJ rbh
Protease FtsH subunit HflK {ECO:0000313|EMBL:ABE44517.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_456_11
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7878..9041)
DNA (1164bp) protein (388aa)
GTPase HflX n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12AC4_POLSJ rbh
GTP-binding protein, HSR1-like protein; K03665 GTP-binding protein HflX rbh
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_456_12
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9056..9307)
DNA (252bp) protein (84aa)
RNA-binding protein Hfq n=1 Tax=Polaromonas sp. CF318 RepID=J2TT91_9BURK
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
hfq; RNA-binding protein Hfq; K03666 host factor-I protein
04302015_24_scaffold_456_13
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9376..10719)
DNA (1344bp) protein (448aa)
GTPase Der n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=DER_POLSJ rbh
engA; GTP-binding protein EngA; K03977 GTP-binding protein rbh
GTPase Der {ECO:0000255|HAMAP-Rule:MF_00195}; GTP-binding protein EngA {ECO:0000255|HAMAP-Rule:MF_00195}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_456_14
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10746..11891)
DNA (1146bp) protein (382aa)
Outer membrane protein assembly factor BamB n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12AC1_POLSJ rbh
Pyrrolo-quinoline quinone rbh
Outer membrane protein assembly factor BamB {ECO:0000256|HAMAP-Rule:MF_00923}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_456_15
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11888..12583)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VNF6_POLNA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM37184.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
04302015_24_scaffold_456_16
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12667..14025)
DNA (1359bp) protein (453aa)
hisS; histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21] rbh
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
Histidine--tRNA ligase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VNF5_POLNA rbh
04302015_24_scaffold_456_17
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14031..15305)
DNA (1275bp) protein (425aa)
ispG, gcpE; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1); K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] rbh
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.1 {ECO:0000256|SAAS:SAAS00088795};; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12AB8_POLSJ rbh
04302015_24_scaffold_456_18
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15305..16309)
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. CF318 RepID=J3D0D9_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL81956.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
hypothetical protein; K15539 cytoskeleton protein RodZ
04302015_24_scaffold_456_19
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16302..17111)
DNA (810bp) protein (270aa)
Tetratricopeptide TPR_2 n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12AB6_POLSJ
hypothetical protein; K02656 type IV pilus assembly protein PilF
Tetratricopeptide TPR_2 {ECO:0000313|EMBL:ABE44526.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_456_20
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17123..18304)
DNA (1182bp) protein (394aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Flags:
hypothetical protein; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Polaromonas sp. CF318 RepID=J3D003_9BURK
04302015_24_scaffold_456_21
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18332..18757)
DNA (426bp) protein (142aa)
ndk; nucleoside diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6]
Nucleoside diphosphate kinase {ECO:0000255|HAMAP-Rule:MF_00451}; Short=NDK {ECO:0000255|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000255|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000255|HAMAP-Rule:MF_00451};; Nucleoside-2-P kinase {ECO:0000255|HAMAP-Rule:MF_00451}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Nucleoside diphosphate kinase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=NDK_POLSJ
04302015_24_scaffold_456_22
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18874..20493)
DNA (1620bp) protein (540aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.-); K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
Pseudouridine synthase n=1 Tax=Polaromonas sp. CF318 RepID=J2TT80_9BURK
04302015_24_scaffold_456_23
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20494..21090)
DNA (597bp) protein (199aa)
Condensin subunit ScpB n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12AB2_POLSJ
condensin subunit ScpB; K06024 segregation and condensation protein B
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_456_24
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21455..22075)
DNA (621bp) protein (207aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
RluA family pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
Pseudouridine synthase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VNE7_POLNA
04302015_24_scaffold_456_25
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22093..22917
DNA (825bp) protein (275aa)
Outer membrane protein assembly factor BamD n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12AB0_POLSJ rbh
hypothetical protein; K05807 putative lipoprotein rbh
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_456_26
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22880..24895)
DNA (2016bp) protein (672aa)
helicase C2; K03722 ATP-dependent DNA helicase DinG [EC:3.6.4.12] rbh
Helicase c2 n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12AA9_POLSJ rbh
Helicase c2 {ECO:0000313|EMBL:ABE44533.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_456_27
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24895..25098)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. CF318 RepID=J2TT76_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJL81947.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
04302015_24_scaffold_456_28
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25185..25943
DNA (759bp) protein (253aa)
Serine/threonine protein phosphatase n=1 Tax=Polaromonas sp. CF318 RepID=J3D0D3_9BURK rbh
Serine/threonine protein phosphatase {ECO:0000313|EMBL:EJL81946.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
protein serine/threonine phosphatase rbh
04302015_24_scaffold_456_29
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25953..26591)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. CF318 RepID=J2KP95_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL81945.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
hypothetical protein
04302015_24_scaffold_456_30
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26588..27652)
DNA (1065bp) protein (355aa)
AFG1-like ATPase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12AA5_POLSJ
AFG1-like protein ATPase; K06916
AFG1-like ATPase {ECO:0000313|EMBL:ABE44537.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Displaying items 1-30 of 33 in total

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