ggKbase home page

bjp_ig3402_scaffold_1324

Search features with annotation key words

Displaying items 1-30 of 50 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig3402_scaffold_1324_1
GWC2_CPR2_39_10, CPR2, Bacteria

Not on your lists


1..282
DNA (282bp) protein (94aa)
50S ribosomal protein L3 id=3158289 bin=GWC1_CPR2_39_9 species=RAAC3_TM7 genus=RAAC3_TM7 taxon_order=RAAC3_TM7 taxon_class=RAAC3_TM7 phylum=TM7 tax=GWC1_CPR2_39_9 organism_group=CPR2 organism_desc=Good
50S ribosomal protein L3 Tax=GWC2_CPR2_39_10
50S ribosomal protein L3, bacterial
bjp_ig3402_scaffold_1324_2

Not on your lists


416..1105
DNA (690bp) protein (230aa)
50S ribosomal protein L4 n=4 Tax=Clostridiales RepID=D4M365_9FIRM id=86539 bin=ACD58 species=unknown genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
50S ribosomal protein L4/L1e
bjp_ig3402_scaffold_1324_3

Not on your lists


1133..1417
DNA (285bp) protein (95aa)
ribosomal protein L25/L23; K02892 large subunit ribosomal protein L23 id=86546 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
50S ribosomal protein L23P
bjp_ig3402_scaffold_1324_4

Not on your lists


1437..2282
DNA (846bp) protein (282aa)
adg:Adeg_1521 ribosomal protein L2; K02886 large subunit ribosomal protein L2 id=86540 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58 rbh
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ribosomal protein L2P
bjp_ig3402_scaffold_1324_5

Not on your lists


2307..2606
DNA (300bp) protein (100aa)
30S ribosomal protein S19 n=1 Tax=uncultured bacterium RepID=K2A4B4_9BACT
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
30S ribosomal protein S19
bjp_ig3402_scaffold_1324_6

Not on your lists


2621..2974
DNA (354bp) protein (118aa)
seg 43..59 id=86533 bin=ACD58 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
50S ribosomal protein L22 {ECO:0000256|RuleBase:RU004008}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
50S ribosomal protein L22
bjp_ig3402_scaffold_1324_7

Not on your lists


2978..3664
DNA (687bp) protein (229aa)
30S ribosomal protein S3 n=1 Tax=uncultured bacterium RepID=K2AIT8_9BACT rbh
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
30S ribosomal protein S3
bjp_ig3402_scaffold_1324_8

Not on your lists


3715..4119
DNA (405bp) protein (135aa)
50S ribosomal protein L16 n=1 Tax=uncultured bacterium RepID=K2B2Q9_9BACT
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
50S ribosomal protein L16
bjp_ig3402_scaffold_1324_9

Not on your lists


4154..4378
DNA (225bp) protein (75aa)
Ribosomal_L29 10..64 id=86542 bin=ACD58 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
bjp_ig3402_scaffold_1324_10
RHI_RIF_OD1_01_48_17, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists


4378..4611
DNA (234bp) protein (78aa)
30S ribosomal protein S17 n=1 Tax=Thermocrinis albus (strain DSM 14484 / JCM 11386 / HI 11/12) RepID=D3SQ06_THEAH
rpsQ; 30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_01_48_17_curated
30S ribosomal protein S17
bjp_ig3402_scaffold_1324_11

Not on your lists


4645..5013
DNA (369bp) protein (123aa)
rplN; ribosomal protein L14; K02874 large subunit ribosomal protein L14 id=86548 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
50S ribosomal protein L14
bjp_ig3402_scaffold_1324_12

Not on your lists


5144..5461
DNA (318bp) protein (106aa)
50S ribosomal protein L24 n=1 Tax=Bacillus coagulans 36D1 RepID=C1PDE9_BACCO id=86549 bin=ACD58 species=Bacillus coagulans genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rplX; 50S ribosomal protein L24
bjp_ig3402_scaffold_1324_13

Not on your lists


5484..6023
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=uncultured bacterium RepID=K2B2R3_9BACT
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rplE; 50S ribosomal protein L5
bjp_ig3402_scaffold_1324_14

Not on your lists


6037..6222
DNA (186bp) protein (62aa)
Ribosomal protein S14 n=3 Tax=Ruminococcus RepID=D4LD84_9FIRM id=86551 bin=ACD58 species=unknown genus=Ruminococcus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364, ECO:0000256|SAAS:SAAS00014984}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
30S ribosomal protein S14
bjp_ig3402_scaffold_1324_15

Not on your lists


6350..6838
DNA (489bp) protein (163aa)
30S ribosomal protein S8 n=1 Tax=uncultured bacterium RepID=K2A4C3_9BACT
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
30S ribosomal protein S8
bjp_ig3402_scaffold_1324_16

Not on your lists


7043..7588
DNA (546bp) protein (182aa)
50S ribosomal protein L6 n=1 Tax=uncultured bacterium RepID=K2A353_9BACT
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rplF; 50S ribosomal protein L6
bjp_ig3402_scaffold_1324_17
RIFOXYD1_FULL_Bdellovibrionales_44_7_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists


7536..7943
DNA (408bp) protein (136aa)
50S ribosomal protein L18 Tax=RIFOXYD1_FULL_Bdellovibrionales_44_7_curated
50S ribosomal protein L18 id=3650315 bin=GWC2_Bacteroidetes_40_22 species=unknown genus=Capnocytophaga taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
50S ribosomal protein L18
bjp_ig3402_scaffold_1324_18

Not on your lists


7960..8484
DNA (525bp) protein (175aa)
30S ribosomal protein S5 n=1 Tax=uncultured bacterium RepID=K2A4A6_9BACT
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rpsE; 30S ribosomal protein S5
bjp_ig3402_scaffold_1324_19

Not on your lists


8465..8923
DNA (459bp) protein (153aa)
50S ribosomal protein L15 n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MKN8_9FIRM id=86557 bin=ACD58 species=Eubacterium siraeum genus=Eubacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ribosomal protein L15
bjp_ig3402_scaffold_1324_20

Not on your lists


8907..10184
DNA (1278bp) protein (426aa)
preprotein translocase, SecY subunit; K03076 preprotein translocase subunit SecY id=86559 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58 rbh
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
preprotein translocase subunit SecY
bjp_ig3402_scaffold_1324_21

Not on your lists

10213..11262
DNA (1050bp) protein (350aa)
seg 28..56 id=86538 bin=ACD58 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD56265.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
bjp_ig3402_scaffold_1324_22

Not on your lists

11202..11933
DNA (732bp) protein (244aa)
adk; adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3] id=86563 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00
adk; adenylate kinase
bjp_ig3402_scaffold_1324_23

Not on your lists

12084..12833
DNA (750bp) protein (250aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974
Methionine aminopeptidase n=1 Tax=uncultured bacterium RepID=K2A325_9BACT rbh
methionine aminopeptidase, type I
bjp_ig3402_scaffold_1324_24

Not on your lists

13023..13235
DNA (213bp) protein (71aa)
translation initiation factor IF-1; K02518 translation initiation factor IF-1 id=86565 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
translation initiation factor IF-1
bjp_ig3402_scaffold_1324_25

Not on your lists


13571..13957
DNA (387bp) protein (129aa)
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 id=86567 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
30S ribosomal protein S13
bjp_ig3402_scaffold_1324_26

Not on your lists


13982..14371
DNA (390bp) protein (130aa)
rpsK; ribosomal protein S11 RpsK; K02948 small subunit ribosomal protein S11 id=86568 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
30S ribosomal protein S11
bjp_ig3402_scaffold_1324_27

Not on your lists


14443..15036
DNA (594bp) protein (198aa)
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 id=86569 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rpsD; 30S ribosomal protein S4
bjp_ig3402_scaffold_1324_28

Not on your lists

15307..16116
DNA (810bp) protein (270aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000313|EMBL:EKD56272.1}; EC=2.7.7.6 {ECO:0000313|EMBL:EKD56272.1};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium
DNA-directed RNA polymerase subunit alpha n=1 Tax=uncultured bacterium RepID=K2A330_9BACT rbh
DNA-directed RNA polymerase subunit alpha
bjp_ig3402_scaffold_1324_29

Not on your lists


16124..16492
DNA (369bp) protein (123aa)
50S ribosomal protein L17 n=1 Tax=uncultured bacterium RepID=K2AIS8_9BACT
50S ribosomal protein L17 {ECO:0000256|RuleBase:RU000661}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
50S ribosomal protein L17
bjp_ig3402_scaffold_1324_30
R_Berkelbacteria_36_9, Berkelbacteria, Bacteria

Not on your lists


16489..16884
DNA (396bp) protein (132aa)
50S ribosomal protein L13 n=1 Tax=uncultured bacterium RepID=K2B2P7_9BACT
50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=RIFCSPHIGHO2_12_FULL_Berkelbacteria_36_9_curated
rplM; 50S ribosomal protein L13
Displaying items 1-30 of 50 in total

View Taxonomy