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bjp_ig3402_scaffold_3875

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig3402_scaffold_3875_1
RBG_13_Chloroflexi_50_10_curated, Chloroflexi, Bacteria

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comp(212..1240)
DNA (1029bp) protein (343aa)
Polysaccharide deacetylase n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AHH3_PYRYC
hypothetical protein Tax=RBG_13_Chloroflexi_50_10_curated
polysaccharide deacetylase
bjp_ig3402_scaffold_3875_2
unknown

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comp(1791..2138)
DNA (348bp) protein (116aa)

This feature has no annotations

bjp_ig3402_scaffold_3875_3
GWF2_OD1_46_32, Azambacteria, Parcubacteria, Bacteria

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2468..3220
DNA (753bp) protein (251aa)
Protease prsW {ECO:0000313|EMBL:KKU38169.1}; TaxID=1618628 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Azambacteria) bacterium GW2011_GWF2_46_32.;"
Protease prsW id=3486325 bin=GWA1_ZB2_49_26 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
hypothetical protein
bjp_ig3402_scaffold_3875_4
RIFOXYD1_FULL_OD1_36_11_curated, Parcubacteria, Bacteria

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comp(3347..6046)
DNA (2700bp) protein (900aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DUL3_9BACT
cation-transporting P-type ATPase Tax=RIFOXYD1_FULL_OD1_36_11_curated
P-type HAD superfamily ATPase
bjp_ig3402_scaffold_3875_5
RIFOXYC2_FULL_OD1_Falkowbacteria_36_12_curated, Falkowbacteria, Parcubacteria, Bacteria

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comp(6216..6716)
DNA (501bp) protein (167aa)
30S ribosomal protein S9 n=1 Tax=uncultured bacterium RepID=K2G704_9BACT
SSU ribosomal protein S9P Tax=RIFOXYC2_FULL_OD1_Falkowbacteria_36_12_curated
30S ribosomal protein S9
bjp_ig3402_scaffold_3875_6
R_RIF_OP11_01_40_20, RIF-OP11-1, Microgenomates, Bacteria

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comp(6876..7289)
DNA (414bp) protein (138aa)
Ribosomal protein L13 n=1 Tax=Filifactor alocis ATCC 35896 RepID=D6GR79_9FIRM id=8673 bin=ACD15 species=Filifactor alocis genus=Filifactor taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_01_40_20_curated
50S ribosomal protein L13
bjp_ig3402_scaffold_3875_7

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comp(7389..7739)
DNA (351bp) protein (117aa)
Marine sediment metagenome DNA, contig: S06H3_C01522 {ECO:0000313|EMBL:GAH97190.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
50S ribosomal protein L17 id=3834882 bin=GWB1_CP_36_13 species=Sphingobacterium sp. genus=Sphingobacterium taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
50S ribosomal protein L17
bjp_ig3402_scaffold_3875_8

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comp(7846..8829)
DNA (984bp) protein (328aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000313|EMBL:KKT27222.1}; TaxID=1618828 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_43_9b.;"
DNA-directed RNA polymerase subunit alpha id=3013128 bin=GWC1_OD1_38_17 species=ACD56 genus=ACD56 taxon_order=ACD56 taxon_class=ACD56 phylum=OD1-i tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
DNA-directed RNA polymerase subunit alpha
bjp_ig3402_scaffold_3875_9

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comp(8900..9529)
DNA (630bp) protein (210aa)
ribosomal protein S4; K02986 small subunit ribosomal protein S4 id=8668 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ribosomal protein S4P
bjp_ig3402_scaffold_3875_10
Parcubacteria bacterium GW2011_GWA1_42_7, Parcubacteria, Bacteria

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comp(9743..10201)
DNA (459bp) protein (153aa)
30S ribosomal protein S11 n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037D367B
30S ribosomal protein S11 {ECO:0000313|EMBL:KKS70172.1}; TaxID=1618785 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_42_7.;"
30S ribosomal protein S11
bjp_ig3402_scaffold_3875_11
R_OD1_Azambacteria_44_14, Azambacteria, Parcubacteria, Bacteria

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comp(10364..10753)
DNA (390bp) protein (130aa)
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RIFCSPLOWO2_02_FULL_OD1_Azambacteria_44_14_curated
30S ribosomal protein S13 id=3013113 bin=GWC1_OD1_38_17 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
rpsM; 30S ribosomal protein S13
bjp_ig3402_scaffold_3875_12
GWE2_OD1_ACD1_35_20, Moranbacteria, Parcubacteria, Bacteria

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comp(11150..11362)
DNA (213bp) protein (71aa)
Translation initiation factor IF-1 id=3834798 bin=GWB1_CP_36_13 species=Jonquetella anthropi genus=Jonquetella taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Translation initiation factor IF-1 {ECO:0000313|EMBL:KKP70594.1}; TaxID=1618712 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWE2_35_2-.;"
translation initiation factor IF-1
bjp_ig3402_scaffold_3875_13
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

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comp(11601..13388)
DNA (1788bp) protein (596aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FDA2_9BACT
Putative uncharacterized protein Tax=RBG_13_RIF_OD1_08_37_53_curated
bjp_ig3402_scaffold_3875_14
RBG_13_OD1_Falkowbacteria_39_14_curated, Falkowbacteria, Parcubacteria, Bacteria

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comp(13378..13629)
DNA (252bp) protein (84aa)
id=4731861 Tax=RBG_13_OD1_Falkowbacteria_39_14_curated
id=4731861 bin=GWC2_OD1_43_27 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
Displaying 14 items

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