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BJP_Ig3402_Miz_0z3_300_2014_Nitrospirae_40_5

BJP_IG3402_Nitrospirae_40_5
In projects: 09MI20_z3_2014  |  09mi20_drep  |  mizunami_genomes

Consensus taxonomy: Nitrospirae  →  Bacteria

Metagenomic Context

Parent: BJP_IG3402_UNK Curated version: BJP_Ig3402_Miz_0z3_300_2014_Nitrospirae_40_5_curated

Properties

Avg. coverage: 4.86 Longest contig: 7.81 Kbp Bin length: 1.40 Mbp GC content: 39.70 %
Contigs count: 758 Features count: 1870 rRNAs count: 0 tRNAs count: 17

Genome completeness

partial RP 35 / 55 MC: 3 BSCG 36 / 51 MC: 2 ASCG 8 / 38 MC: 1
Displaying items 401-450 of 758 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
bjp_ig3402_scaffold_17891
Species: GWB2_Nitrospirae_47_37_curated (100%)
2 2565 bp 40.74 5.44 100.00
bjp_ig3402_scaffold_38539
Species: RBG_13_Nitrospirae_39_12_curated (50%)
2 1372 bp 38.48 4.70 86.37
bjp_ig3402_scaffold_30533
Species: GWC2_Nitrospirae_57_9_curated (50%)
2 1661 bp 36.42 3.79 90.49
bjp_ig3402_scaffold_40261
Species: GWB2_Nitrospirae_47_37_curated (100%)
2 1324 bp 42.60 3.51 94.71
bjp_ig3402_scaffold_46150
Species: Thermodesulfovibrio yellowstonii (50%)
2 1174 bp 39.35 4.09 97.87
bjp_ig3402_scaffold_31968
Species: RBG_13_Nitrospirae_39_12_curated (100%)
2 1599 bp 33.65 4.41 62.85
bjp_ig3402_scaffold_38545
Species: GWF2_Lentisphaerae_45_14_curated (50%)
2 1372 bp 33.02 4.70 92.71
bjp_ig3402_scaffold_36819
Species: RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated (50%)
2 1425 bp 40.70 4.00 86.11
bjp_ig3402_scaffold_38547
Species: RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated (50%)
2 1372 bp 39.14 4.15 73.69
bjp_ig3402_scaffold_30796
Species: RBG_16_Deltaproteobacteria_50_11_curated (50%)
2 1649 bp 39.72 3.46 92.06
bjp_ig3402_scaffold_24774
Species: GWB2_Nitrospirae_47_37_curated (50%)
2 1968 bp 40.60 4.04 91.31
bjp_ig3402_scaffold_42088
Species: BJP_IG2158_Nitrospirales_45_240 (50%)
2 1272 bp 38.92 4.25 84.20
bjp_ig3402_scaffold_37362
Species: GWB2_Nitrospirae_47_37_curated (100%)
2 1408 bp 36.93 4.79 77.13
bjp_ig3402_scaffold_35369
Species: BJP_IG2158_Nitrospirales_45_240 (100%)
2 1473 bp 38.36 4.99 101.22
bjp_ig3402_scaffold_42347
Species: Thermodesulfovibrio yellowstonii (50%)
2 1266 bp 41.79 4.74 83.89
bjp_ig3402_scaffold_47186
Species: Sulfurihydrogenibium azorense (50%)
2 1153 bp 40.85 4.68 93.93
bjp_ig3402_scaffold_26733
Species: GWB2_Nitrospirae_47_37_curated (100%)
2 1851 bp 37.82 6.81 84.28
bjp_ig3402_scaffold_52308
Species: GWB2_Nitrospirae_47_37_curated (50%)
2 1053 bp 40.08 3.28 80.91
bjp_ig3402_scaffold_29078
Species: GWB2_Nitrospirae_47_37_curated (50%)
2 1731 bp 39.63 4.42 99.65
bjp_ig3402_scaffold_20670
Species: GWB2_Nitrospirae_47_37_curated (100%)
2 2280 bp 40.92 3.75 92.37
bjp_ig3402_scaffold_21871
Species: GWB2_Nitrospirae_47_37_curated (50%)
2 2174 bp 36.48 4.97 69.96
bjp_ig3402_scaffold_34650
Species: GWF2_Nitrospirae_44_13_curated (50%)
2 1496 bp 36.83 5.31 84.83
bjp_ig3402_scaffold_54593
Species: GWB2_Geobacteraceae_52_12_curated (50%)
2 1014 bp 40.43 4.59 100.59
bjp_ig3402_scaffold_32268
Species: GWC2_Nitrospirae_57_13_curated (50%)
2 1586 bp 39.97 3.88 90.61
bjp_ig3402_scaffold_28092
Species: CG_Nitrosp_02 (50%)
2 1778 bp 38.13 4.30 70.53
bjp_ig3402_scaffold_40540
Species: RBG_19FT_COMBO_Nitrospirae_42_15_curated (50%)
2 1316 bp 38.22 4.90 47.19
bjp_ig3402_scaffold_50499
Species: GWC2_Planctomycetes_49_10_curated (50%)
2 1087 bp 36.34 5.52 99.91
bjp_ig3402_scaffold_47964
Species: Thermococcus nautili (50%)
2 1136 bp 37.24 2.64 97.18
bjp_ig3402_scaffold_31223
Species: Acetonema longum (50%)
2 1630 bp 38.90 5.25 90.74
bjp_ig3402_scaffold_21369
Species: GWB2_Nitrospirae_47_37_curated (50%)
2 2213 bp 38.73 5.29 69.68
bjp_ig3402_scaffold_38825
Species: GWC2_Geobacteraceae_55_20_curated (50%)
2 1363 bp 39.62 5.50 79.24
bjp_ig3402_scaffold_25978
Species: Thermodesulfovibrio yellowstonii (50%)
2 1894 bp 38.75 6.10 65.42
bjp_ig3402_scaffold_23179
Species: GWB2_Nitrospirae_47_37_curated (100%)
2 2075 bp 33.88 4.92 96.14
bjp_ig3402_scaffold_39219
Species: GWB2_Nitrospirae_47_37_curated (100%)
2 1352 bp 42.60 3.66 90.98
bjp_ig3402_scaffold_47714
Species: GWB2_Nitrospirae_47_37_curated (100%)
2 1141 bp 38.30 4.47 94.65
bjp_ig3402_scaffold_19460
Species: Candidatus Jettenia caeni (50%)
2 2396 bp 36.60 3.63 84.14
bjp_ig3402_scaffold_50251
Species: GWB2_Nitrospirae_47_37_curated (50%)
2 1091 bp 40.97 3.44 99.54
bjp_ig3402_scaffold_54603
Species: GWB2_Nitrospirae_47_37_curated (100%)
2 1013 bp 43.53 5.77 95.66
bjp_ig3402_scaffold_22423
Species: GWB2_Nitrospirae_47_37_curated (100%)
2 2132 bp 41.51 4.43 100.05
bjp_ig3402_scaffold_9944
Species: GWB2_Nitrospirae_47_37_curated (100%)
2 4205 bp 38.26 4.21 83.69
bjp_ig3402_scaffold_41349
Species: RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated (50%)
2 1293 bp 40.22 4.41 93.50
bjp_ig3402_scaffold_45420
Species: Peptococcaceae bacterium BRH_c8a (50%)
2 1191 bp 42.65 5.54 93.95
bjp_ig3402_scaffold_50772
Species: GWB2_Nitrospirae_47_37_curated (50%)
2 1081 bp 40.15 3.19 88.81
bjp_ig3402_scaffold_25222
Species: Desulfonatronospira thiodismutans (50%)
2 1940 bp 37.78 4.72 88.14
bjp_ig3402_scaffold_25223
Species: CG_Nitrosp_02 (50%)
2 1940 bp 39.18 4.64 76.86
bjp_ig3402_scaffold_45678
Species: RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated (50%)
2 1185 bp 37.13 5.82 78.73
bjp_ig3402_scaffold_40816
Species: GWB2_Nitrospirae_47_37_curated (50%)
2 1308 bp 38.07 4.93 73.39
bjp_ig3402_scaffold_33119
Species: CG_Nitrosp_01 (50%)
2 1553 bp 38.31 4.35 98.91
bjp_ig3402_scaffold_47727
Species: RBG_16_Nitrospirae_43_8_curated (50%)
2 1141 bp 38.56 5.00 99.65
bjp_ig3402_scaffold_21641
Species: GWB2_Nitrospirae_47_37_curated (50%)
2 2192 bp 35.63 2.87 68.57
Displaying items 401-450 of 758 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.