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13_1_20cm_3_UNK

In projects: 13_1_20CM_3  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 6.92 Longest contig: 118.83 Kbp Bin length: 627.21 Mbp GC content: 62.89 %
Contigs count: 305424 Features count: 841509 rRNAs count: 69 tRNAs count: 5835

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38
Displaying items 305301-305350 of 305424 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_20cm_3_scaffold_403633 3 1287 bp 71.25 7.22 111.19
13_1_20cm_3_scaffold_226079
Species: Stigmatella aurantiaca (50%)
2 1206 bp 73.05 9.16 111.19
13_1_20cm_3_scaffold_301507
Species: RLO_Betaproteobacteria_68_19 (100%)
2 1003 bp 68.59 6.26 111.27
13_1_20cm_3_scaffold_151375
Species: Candidatus Microthrix parvicella (50%)
2 1453 bp 75.91 9.16 111.29
13_1_20cm_3_scaffold_291386
Species: RBG_16_Chloroflexi_57_9_curated (50%)
2 1027 bp 69.72 7.33 111.30
13_1_20cm_3_scaffold_189987
Species: RLO_RIF_CHLX_71_12 (50%)
2 1310 bp 66.03 5.56 111.30
13_1_20cm_3_scaffold_209393
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)
2 1253 bp 60.26 3.81 111.33
13_1_20cm_3_scaffold_173008
Species: Anaeromyxobacter sp. Fw109-5 (50%)
2 1368 bp 66.30 11.74 111.40
13_1_20cm_3_scaffold_333431
Phylum: Proteobacteria (66.67%)
3 1556 bp 72.56 3.06 111.44
13_1_20cm_3_scaffold_438463 3 1300 bp 72.69 7.34 111.46
13_1_20cm_3_scaffold_217333
Genus: Bradyrhizobium (66.67%)
3 1230 bp 60.81 3.27 111.46
13_1_20cm_3_scaffold_148311
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1466 bp 60.91 4.45 111.53
13_1_20cm_3_scaffold_239022
Species: Anaeromyxobacter sp. K (50%)
2 1170 bp 61.97 9.01 111.54
13_1_20cm_3_scaffold_183362
Species: R_Rokubacteria_68_19 (50%)
2 1331 bp 56.50 5.09 111.57
13_1_20cm_3_scaffold_291472
Species: RIFOXYB12_FULL_Lentisphaerae_65_16_curated (50%)
2 1027 bp 59.49 4.89 111.59
13_1_20cm_3_scaffold_224016
Species: Conexibacter woesei (100%)
2 1567 bp 73.13 5.93 111.62
13_1_20cm_3_scaffold_269513
Class: Deltaproteobacteria (66.67%)
3 1084 bp 66.79 3.94 111.62
13_1_20cm_3_scaffold_273060
Species: Paenibacillus sp. D9 (50%)
2 1075 bp 55.72 4.20 111.63
13_1_20cm_3_scaffold_230623
Species: Conexibacter woesei (50%)
2 1193 bp 72.51 3.79 111.65
13_1_20cm_3_scaffold_441371
Species: GWF2_Verrucomicrobia_62_7_curated (50%)
2 1346 bp 63.00 8.02 111.66
13_1_20cm_3_scaffold_211653
Species: Conexibacter woesei (50%)
2 1246 bp 71.51 5.84 111.72
13_1_20cm_3_scaffold_273254
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)
2 1074 bp 65.46 3.04 111.73
13_1_20cm_3_scaffold_489297 4 1114 bp 75.04 11.27 111.76
13_1_20cm_3_scaffold_124759
Species: Mycobacterium smegmatis (50%)
2 1581 bp 71.85 4.60 111.77
13_1_20cm_3_scaffold_290230
Species: Candidatus Solibacter usitatus (66.67%)
3 1030 bp 60.49 3.90 111.85
13_1_20cm_3_scaffold_286237
Domain: Bacteria (66.67%)
3 1040 bp 67.79 10.38 111.92
13_1_20cm_3_scaffold_394514
Species: RBG_16_KB1_OP1_55_9_curated (50%)
2 1171 bp 62.17 14.36 111.96
13_1_20cm_3_scaffold_474709
Species: Myxococcus fulvus (50%)
2 1251 bp 68.90 3.01 111.99
13_1_20cm_3_scaffold_124092
Genus: Bradyrhizobium (66.67%)
3 1585 bp 57.29 8.23 112.05
13_1_20cm_3_scaffold_233266
Species: RBG_16_Actinobacteria_67_10_curated (50%)
2 1186 bp 68.38 4.66 112.06
13_1_20cm_3_scaffold_218888
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated (50%)
2 1226 bp 65.58 4.50 112.07
13_1_20cm_3_scaffold_242893
Species: Nocardia nova (50%)
2 1159 bp 72.65 3.47 112.08
13_1_20cm_3_scaffold_452953
Class: Actinobacteria (66.67%)
3 1282 bp 72.62 5.09 112.09
13_1_20cm_3_scaffold_295556
Species: Pseudonocardia dioxanivorans (50%)
2 1017 bp 72.27 3.46 112.09
13_1_20cm_3_scaffold_283981
Species: Frankia sp. EuI1c (50%)
2 1046 bp 72.08 5.76 112.14
13_1_20cm_3_scaffold_141402
Species: Candidatus Solibacter usitatus (66.67%)
3 1498 bp 54.81 6.03 112.15
13_1_20cm_3_scaffold_227859 2 1201 bp 55.37 2.30 112.16
13_1_20cm_3_scaffold_169232 2 1382 bp 66.93 4.18 112.23
13_1_20cm_3_scaffold_165052 3 1398 bp 66.02 3.77 112.23
13_1_20cm_3_scaffold_147458
Species: candidate division Zixibacteria (50%)
2 1470 bp 63.67 3.41 112.24
13_1_20cm_3_scaffold_359449
Domain: Bacteria (50%)
4 1303 bp 72.37 9.82 112.36
13_1_20cm_3_scaffold_284755
Species: Chthoniobacter flavus (100%)
2 1044 bp 60.25 7.21 112.36
13_1_20cm_3_scaffold_261913
Domain: Bacteria (66.67%)
3 1105 bp 55.75 6.81 112.40
13_1_20cm_3_scaffold_250994
Domain: Bacteria (66.67%)
3 1137 bp 65.96 7.28 112.40
13_1_20cm_3_scaffold_225238
Species: Pedosphaera parvula (50%)
2 1209 bp 55.50 2.70 112.41
13_1_20cm_3_scaffold_165147
Species: Austwickia chelonae (50%)
2 1398 bp 57.08 3.23 112.45
13_1_20cm_3_scaffold_199045 3 1283 bp 51.83 2.35 112.47
13_1_20cm_3_scaffold_263319
Species: Blastococcus saxobsidens (50%)
2 1101 bp 68.12 7.07 112.53
13_1_20cm_3_scaffold_297114
Species: R_NC10_66_22 (50%)
2 1013 bp 64.46 6.94 112.54
13_1_20cm_3_scaffold_413120
Species: R_Gemmatimonadetes_71_11 (50%)
2 1346 bp 66.05 7.83 112.56
Displaying items 305301-305350 of 305424 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.