ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 6.92 Longest contig: 118.83 Kbp Bin length: 627.21 Mbp GC content: 62.89 %

Contigs count: 305424 Features count: 841509 rRNAs count: 69 tRNAs count: 5835

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38

Displaying items 305351-305400 of 305424 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_20cm_3_scaffold_293221 Species: Streptomyces katrae (50%)	2	1023 bp	72.14	4.91	112.61
13_1_20cm_3_scaffold_191692	2	1305 bp	70.88	5.58	112.64
13_1_20cm_3_scaffold_428928 Species: Gemmatimonadetes bacterium KBS708 (50%)	2	1446 bp	58.51	3.47	112.66
13_1_20cm_3_scaffold_250764 Species: Kutzneria albida (50%)	2	1137 bp	68.69	5.96	112.66
13_1_20cm_3_scaffold_289038	3	1033 bp	62.44	5.83	112.68
13_1_20cm_3_scaffold_243507 Species: Chthoniobacter flavus (50%)	2	1158 bp	56.04	5.64	112.69
13_1_20cm_3_scaffold_356924 Species: RLO_RIF_CHLX_71_12 (50%)	4	2044 bp	68.88	5.89	112.72
13_1_20cm_3_scaffold_295396	8	1018 bp	66.50	3.45	112.77
13_1_20cm_3_scaffold_145196 Species: Candidatus Solibacter usitatus (50%)	2	1481 bp	63.00	4.07	112.83
13_1_20cm_3_scaffold_273370 Species: RLO_Verrucomicrobia_64_8 (50%)	2	1074 bp	53.72	5.14	112.85
13_1_20cm_3_scaffold_172066 Species: Pyrinomonas methylaliphatogenes (50%)	2	1371 bp	50.47	3.66	112.91
13_1_20cm_3_scaffold_283938 Domain: Bacteria (66.67%)	3	1046 bp	70.84	5.76	113.00
13_1_20cm_3_scaffold_501672 Species: Gemmatimonadetes bacterium KBS708 (50%)	2	1250 bp	75.36	4.42	113.04
13_1_20cm_3_scaffold_283034 Species: RBG_16_Planctomycetes_64_12_curated (50%)	2	1048 bp	56.58	3.83	113.07
13_1_20cm_3_scaffold_259759 Order: Rhizobiales (66.67%)	3	1111 bp	59.05	4.07	113.14
13_1_20cm_3_scaffold_249769 Species: RLO_RIF_CHLX_71_12 (50%)	2	1140 bp	67.02	8.15	113.16
13_1_20cm_3_scaffold_470928 Species: Paenibacillus sp. JCM 10914 (50%)	2	1124 bp	69.22	3.80	113.17
13_1_20cm_3_scaffold_448325 Species: Ktedonobacter racemifer (100%)	3	1320 bp	57.05	3.23	113.18
13_1_20cm_3_scaffold_226226 Species: Thioploca ingrica (50%)	2	1206 bp	72.39	3.95	113.18
13_1_20cm_3_scaffold_351117	3	1316 bp	53.27	4.39	113.30
13_1_20cm_3_scaffold_385018 Species: Granulicella mallensis (50%)	2	1361 bp	61.87	3.14	113.30
13_1_20cm_3_scaffold_385451 Species: RLO_Gemmatimonadetes_68_9 (50%)	2	1480 bp	69.80	13.74	113.31
13_1_20cm_3_scaffold_198526 Species: Streptomyces tsukubaensis (50%)	2	1284 bp	67.45	2.93	113.32
13_1_20cm_3_scaffold_152748 Species: R_Betaproteobacteria_65_24 (50%)	2	1447 bp	66.69	9.89	113.41
13_1_20cm_3_scaffold_294004 Species: Actinoplanes sp. N902-109 (50%)	2	1021 bp	74.34	4.67	113.42
13_1_20cm_3_scaffold_174622 Phylum: Acidobacteria (66.67%)	3	1362 bp	56.02	5.53	113.44
13_1_20cm_3_scaffold_164879 Species: Conexibacter woesei (50%)	2	1399 bp	70.62	3.41	113.44
13_1_20cm_3_scaffold_275505 Species: Methylobacterium extorquens (50%)	2	1068 bp	59.64	11.05	113.48
13_1_20cm_3_scaffold_288861 Species: Chthoniobacter flavus (50%)	2	1033 bp	57.31	7.53	113.55
13_1_20cm_3_scaffold_283850 Species: Pyrinomonas methylaliphatogenes (50%)	2	1046 bp	59.94	4.32	113.58
13_1_20cm_3_scaffold_437558	3	1294 bp	67.23	7.95	113.60
13_1_20cm_3_scaffold_245869 Species: mine drainage metagenome (50%)	2	1151 bp	56.13	2.62	113.64
13_1_20cm_3_scaffold_253652 Species: RBG_13_Actinobacteria_55_18_curated (50%)	2	1129 bp	76.35	8.45	113.73
13_1_20cm_3_scaffold_220095 Species: uncultured bacterium (50%)	2	1223 bp	57.07	6.16	113.82
13_1_20cm_3_scaffold_505480 Species: Halomicrobium mukohataei (50%)	2	1169 bp	68.52	10.74	113.94
13_1_20cm_3_scaffold_250660 Species: Chloracidobacterium thermophilum (50%)	2	1137 bp	58.14	5.08	113.98
13_1_20cm_3_scaffold_199478 Species: uncultured bacterium (50%)	2	1281 bp	52.85	4.31	114.05
13_1_20cm_3_scaffold_164560	14	1400 bp	66.21	5.38	114.07
13_1_20cm_3_scaffold_115176	10	1637 bp	58.09	5.83	114.11
13_1_20cm_3_scaffold_345953 Species: uncultured bacterium (50%)	2	1390 bp	58.56	4.51	114.17
13_1_20cm_3_scaffold_349797 Species: Amycolatopsis azurea (50%)	2	1371 bp	68.78	7.69	114.22
13_1_20cm_3_scaffold_276430 Species: uncultured bacterium (50%)	2	1066 bp	58.16	3.06	114.26
13_1_20cm_3_scaffold_446744 Species: Bradyrhizobium sp. BTAi1 (50%)	2	1288 bp	67.62	9.16	114.36
13_1_20cm_3_scaffold_195581 Species: Chthoniobacter flavus (50%)	2	1293 bp	51.35	4.66	114.39
13_1_20cm_3_scaffold_255010 Species: Conexibacter woesei (50%)	2	1125 bp	75.02	7.36	114.40
13_1_20cm_3_scaffold_207996 Species: uncultured bacterium (50%)	2	1256 bp	57.72	3.00	114.41
13_1_20cm_3_scaffold_250495 Domain: Bacteria (66.67%)	3	1138 bp	59.05	2.65	114.68
13_1_20cm_3_scaffold_224697 Species: Pedosphaera parvula (50%)	2	1210 bp	56.20	3.11	114.79
13_1_20cm_3_scaffold_254544 Domain: Bacteria (66.67%)	3	1126 bp	70.78	6.24	114.83
13_1_20cm_3_scaffold_193805 Species: Candidatus Solibacter usitatus (50%)	2	1298 bp	57.24	3.29	114.87

Displaying items 305351-305400 of 305424 in total

13_1_20cm_3_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_1_20cm_3_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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