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13_1_20CM_4_Bacteriodetes_60_6

13_1_20CM_4_Bacteria_61_7
In projects: 13_1_20CM_4  |  angelo_ncbi_2016  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Bacteria

Metagenomic Context

Parent: 13_1_20cm_4_UNK

Properties

Avg. coverage: 6.87 Longest contig: 25.24 Kbp Bin length: 5.94 Mbp GC content: 60.62 %
Contigs count: 3728 Features count: 6853 rRNAs count: 0 tRNAs count: 10

Genome completeness

partial RP 12 / 55 MC: 1 BSCG 11 / 51 MC: 2 ASCG 5 / 38 MC: 1

Description

<1 partial genome-CB

Displaying items 101-150 of 3728 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_20cm_4_scaffold_126024
Species: Niastella koreensis (50%)
2 1470 bp 42.93 2.73 100.82
13_1_20cm_4_scaffold_53500
Domain: Bacteria (100%)
3 2122 bp 70.55 22.36 100.80
13_1_20cm_4_scaffold_96844
Species: BJP_IG2102_Coriobacteriales_64_17 (50%)
2 1646 bp 68.35 9.45 100.79
13_1_20cm_4_scaffold_80337
Phylum: Gemmatimonadetes (100%)
3 1783 bp 67.64 8.31 100.79
13_1_20cm_4_scaffold_133681
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1432 bp 64.59 8.24 100.77
13_1_20cm_4_scaffold_64451
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1959 bp 75.91 16.78 100.77
13_1_20cm_4_scaffold_61508
Species: Cylindrospermum stagnale (50%)
2 1998 bp 68.37 26.26 100.75
13_1_20cm_4_scaffold_197703
Species: Niastella koreensis (100%)
2 1200 bp 44.67 1.67 100.75
13_1_20cm_4_scaffold_56525
Species: Rhodothermus marinus (50%)
4 3386 bp 61.67 6.45 100.74
13_1_20cm_4_scaffold_219955
Species: Prevotella sp. CAG:924 (50%)
2 1135 bp 51.10 4.20 100.71
13_1_20cm_4_scaffold_134620
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1427 bp 57.32 3.17 100.70
13_1_20cm_4_scaffold_197516
Order: Sphingobacteriales (66.67%)
3 1201 bp 34.89 2.30 100.67
13_1_20cm_4_scaffold_143069
Species: RLO_Deltaproteobacteria_60_16 (100%)
2 1389 bp 76.46 3.98 100.65
13_1_20cm_4_scaffold_231869
Species: RBG_16_Actinobacteria_68_12_curated (100%)
2 1100 bp 67.09 2.97 100.64
13_1_20cm_4_scaffold_83295
Species: BJP_08E140C01_Clostridiales_46_19 (50%)
2 1756 bp 61.56 5.86 100.63
13_1_20cm_4_scaffold_128408
Species: Opitutus terrae (50%)
2 1458 bp 53.02 5.34 100.62
13_1_20cm_4_scaffold_208459
Species: Flavihumibacter sp. ZG627 (50%)
2 1169 bp 45.77 3.22 100.60
13_1_20cm_4_scaffold_114903
Species: Niastella koreensis (50%)
2 1530 bp 33.01 2.95 100.59
13_1_20cm_4_scaffold_112286
Phylum: Bacteroidetes (66.67%)
3 1545 bp 68.22 15.92 100.58
13_1_20cm_4_scaffold_45820
Species: uncultured bacterium (50%)
2 2268 bp 65.04 14.28 100.53
13_1_20cm_4_scaffold_213128
Species: RBG_16_Chloroflexi_50_9_curated (50%)
2 1155 bp 52.03 4.78 100.52
13_1_20cm_4_scaffold_20424
Species: marine sediment metagenome (50%)
2 3173 bp 72.01 6.49 100.50
13_1_20cm_4_scaffold_125735
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1472 bp 56.93 5.46 100.48
13_1_20cm_4_scaffold_224807
Species: R_Gemmatimonadetes_71_11 (50%)
2 1120 bp 61.88 3.59 100.45
13_1_20cm_4_scaffold_249727
Species: Verrucomicrobiae bacterium DG1235 (50%)
2 1049 bp 53.67 4.79 100.38
13_1_20cm_4_scaffold_105968
Species: Pyrinomonas methylaliphatogenes (50%)
2 1584 bp 68.43 6.18 100.38
13_1_20cm_4_scaffold_226509
Species: RLO_RIF_CHLX_71_12 (100%)
2 1115 bp 69.78 12.61 100.36
13_1_20cm_4_scaffold_216626
Species: Candidatus Entotheonella sp. TSY1 (100%)
2 1145 bp 65.76 4.38 100.35
13_1_20cm_4_scaffold_210625
Species: Opitutaceae bacterium TAV1 (50%)
2 1163 bp 63.54 3.24 100.34
13_1_20cm_4_scaffold_202205
Species: Streptomyces olindensis (50%)
2 1187 bp 75.48 4.44 100.34
13_1_20cm_4_scaffold_157603
Species: GWF2_Verrucomicrobia_62_7_curated (100%)
2 1331 bp 56.05 11.31 100.30
13_1_20cm_4_scaffold_267291
Species: Marivirga tractuosa (50%)
2 1002 bp 56.49 11.02 100.30
13_1_20cm_4_scaffold_267328
Species: Corallococcus coralloides (50%)
2 1002 bp 64.77 3.26 100.30
13_1_20cm_4_scaffold_156043
Species: R_Nitrospirae_62_14 (50%)
2 1337 bp 65.89 3.19 100.30
13_1_20cm_4_scaffold_265118
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1008 bp 63.79 2.74 100.30
13_1_20cm_4_scaffold_148540
Species: Flavihumibacter petaseus (50%)
2 1367 bp 69.64 15.42 100.29
13_1_20cm_4_scaffold_258120
Species: RBG_16_Caldithrix_48_16_curated (50%)
2 1026 bp 70.96 5.63 100.29
13_1_20cm_4_scaffold_123772
Phylum: Acidobacteria (50%)
4 2396 bp 72.70 5.66 100.29
13_1_20cm_4_scaffold_147781
Species: Pedobacter sp. BAL39 (50%)
2 1370 bp 66.35 2.56 100.29
13_1_20cm_4_scaffold_255734
Species: GWA2_Bacteroidetes_40_15_curated (50%)
2 1032 bp 68.31 11.43 100.29
13_1_20cm_4_scaffold_251441
Species: Pedobacter sp. V48 (50%)
2 1044 bp 60.54 3.37 100.29
13_1_20cm_4_scaffold_250442
Species: Fibrisoma limi (50%)
2 1047 bp 70.68 9.59 100.29
13_1_20cm_4_scaffold_245105
Species: GWC2_Pelobacteraceae_58_13_curated (50%)
2 1062 bp 70.62 8.04 100.28
13_1_20cm_4_scaffold_244915
Species: GWF2_Bacteroidetes_43_11_curated (50%)
2 1062 bp 52.64 3.55 100.28
13_1_20cm_4_scaffold_135987
Species: Flavihumibacter petaseus (50%)
2 1421 bp 43.63 3.00 100.28
13_1_20cm_4_scaffold_81031
Species: R_Gemmatimonadetes_71_11 (50%)
2 1777 bp 63.53 8.33 100.28
13_1_20cm_4_scaffold_239561
Species: Balneola vulgaris (50%)
2 1077 bp 63.60 4.89 100.28
13_1_20cm_4_scaffold_239728
Species: Rhodothermus marinus (50%)
2 1077 bp 69.92 12.58 100.28
13_1_20cm_4_scaffold_236780
Species: Robiginitalea biformata (50%)
2 1086 bp 69.98 5.32 100.28
13_1_20cm_4_scaffold_233316
Species: RBG_16_Gamma2_65_34_curated (50%)
2 1095 bp 59.91 4.13 100.27
Displaying items 101-150 of 3728 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.