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13_1_20CM_4_Bacteriodetes_60_6

13_1_20CM_4_Bacteria_61_7
In projects: 13_1_20CM_4  |  angelo_ncbi_2016  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Bacteria

Metagenomic Context

Parent: 13_1_20cm_4_UNK

Properties

Avg. coverage: 6.87 Longest contig: 25.24 Kbp Bin length: 5.94 Mbp GC content: 60.62 %
Contigs count: 3728 Features count: 6853 rRNAs count: 0 tRNAs count: 10

Genome completeness

partial RP 12 / 55 MC: 1 BSCG 11 / 51 MC: 2 ASCG 5 / 38 MC: 1

Description

<1 partial genome-CB

Displaying items 151-200 of 3728 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_20cm_4_scaffold_231454
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1101 bp 59.85 2.74 100.27
13_1_20cm_4_scaffold_225276
Species: Desulfovibrio vulgaris (50%)
2 1119 bp 68.10 3.59 100.27
13_1_20cm_4_scaffold_222127
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
2 1128 bp 71.99 22.47 100.27
13_1_20cm_4_scaffold_116085
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated (50%)
2 1523 bp 61.26 3.63 100.26
13_1_20cm_4_scaffold_217231
Species: Gloeobacter violaceus (50%)
2 1143 bp 54.33 3.95 100.26
13_1_20cm_4_scaffold_215165
Species: Cesiribacter andamanensis (50%)
2 1149 bp 54.74 6.99 100.26
13_1_20cm_4_scaffold_207069
Species: RBG_16_RIF_WS3X_71_46_curated (100%)
2 1173 bp 67.69 3.00 100.26
13_1_20cm_4_scaffold_109152
Species: BJP_IG2102_Bacteroidetes_40_9 (50%)
2 1565 bp 69.97 9.94 100.26
13_1_20cm_4_scaffold_194920
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1209 bp 68.24 9.76 100.25
13_1_20cm_4_scaffold_192749
Species: uncultured bacterium (50%)
2 1215 bp 57.12 5.99 100.25
13_1_20cm_4_scaffold_190878
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1221 bp 68.88 11.10 100.25
13_1_20cm_4_scaffold_98973
Species: Bacteroides clarus (50%)
2 1631 bp 65.36 15.85 100.25
13_1_20cm_4_scaffold_185814
Species: RIFOXYD1_FULL_Bdellovibrionales_55_31_curated (50%)
2 1236 bp 56.47 3.66 100.24
13_1_20cm_4_scaffold_183012
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1245 bp 70.12 14.52 100.24
13_1_20cm_4_scaffold_180071
Species: RBG_13_Bacteroidetes_46_8_curated (50%)
2 1254 bp 33.97 2.40 100.24
13_1_20cm_4_scaffold_88306
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1712 bp 68.05 11.00 100.23
13_1_20cm_4_scaffold_168197
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1293 bp 70.61 6.60 100.23
13_1_20cm_4_scaffold_32836
Species: RLO_Betaproteobacteria_65_14 (50%)
4 2607 bp 67.20 20.60 100.23
13_1_20cm_4_scaffold_161140
Species: marine sediment metagenome (50%)
2 1317 bp 67.05 3.05 100.23
13_1_20cm_4_scaffold_159730
Species: Sphingobacterium sp. 21 (50%)
2 1323 bp 64.25 2.28 100.23
13_1_20cm_4_scaffold_156457
Species: GWE2_Bacteroidetes_29_8_curated (50%)
2 1335 bp 32.43 2.63 100.23
13_1_20cm_4_scaffold_78343
Species: R_Gemmatimonadetes_71_11 (50%)
2 1802 bp 68.70 16.85 100.22
13_1_20cm_4_scaffold_151925
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated (100%)
2 1353 bp 65.85 3.90 100.22
13_1_20cm_4_scaffold_148999
Species: RBG_16_Anaeromyxobacter_69_14_curated (50%)
2 1365 bp 70.04 5.52 100.22
13_1_20cm_4_scaffold_148130
Species: Chitinophaga pinensis (50%)
2 1368 bp 44.15 2.39 100.22
13_1_20cm_4_scaffold_146063
Species: RLO_Betaproteobacteria_65_14 (50%)
2 1377 bp 55.99 8.93 100.22
13_1_20cm_4_scaffold_174072
Species: RBG_16_Chloroflexi_54_18_curated (50%)
2 2296 bp 54.66 6.78 100.22
13_1_20cm_4_scaffold_144603
Species: RBG_19FT_COMBO_Chloroflexi_50_10_curated (50%)
2 1383 bp 55.31 6.72 100.22
13_1_20cm_4_scaffold_73622
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
2 1850 bp 71.51 9.90 100.22
13_1_20cm_4_scaffold_143168
Species: Flammeovirgaceae bacterium 311 (50%)
2 1389 bp 66.23 2.89 100.22
13_1_20cm_4_scaffold_141651
Species: R_Rokubacteria_68_19 (50%)
2 1395 bp 65.23 7.92 100.22
13_1_20cm_4_scaffold_138226
Species: Haliscomenobacter hydrossis (50%)
2 1410 bp 44.26 3.74 100.21
13_1_20cm_4_scaffold_138318
Species: R_Deltaproteobacteria_43_33 (50%)
2 1410 bp 63.19 5.70 100.21
13_1_20cm_4_scaffold_138362
Species: RBG_13_Acidobacteria_68_16_curated (50%)
2 1410 bp 70.64 9.26 100.21
13_1_20cm_4_scaffold_68485
Species: Hymenobacter sp. DG25B (50%)
2 1910 bp 71.99 14.32 100.21
13_1_20cm_4_scaffold_66514
Species: RIFOXYC2_FULL_Ignavibacteria_38_25_curated (50%)
2 1934 bp 68.98 9.86 100.21
13_1_20cm_4_scaffold_120874
Species: GWF2_Bacteroidetes_43_11_curated (50%)
2 1497 bp 71.81 10.40 100.20
13_1_20cm_4_scaffold_120215
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)
2 1500 bp 64.13 9.20 100.20
13_1_20cm_4_scaffold_60942
Species: Chondromyces apiculatus (50%)
2 2006 bp 67.60 6.63 100.20
13_1_20cm_4_scaffold_264579
Species: R_Gemmatimonadetes_71_11 (50%)
2 1009 bp 72.94 6.72 100.20
13_1_20cm_4_scaffold_35464
Species: Gemmatimonadetes bacterium KBS708 (75%)
4 2527 bp 68.50 16.29 100.20
13_1_20cm_4_scaffold_59235
Species: R_Gemmatimonadetes_71_11 (100%)
2 2030 bp 74.09 13.11 100.20
13_1_20cm_4_scaffold_61852
Phylum: Bacteroidetes (66.67%)
3 2638 bp 65.24 13.89 100.19
13_1_20cm_4_scaffold_54176
Species: R_Acidobacteria_61_28 (50%)
2 2111 bp 58.50 3.92 100.19
13_1_20cm_4_scaffold_106012
Species: Erythrobacter sp. NAP1 (50%)
2 1584 bp 68.94 6.18 100.19
13_1_20cm_4_scaffold_245475
Species: Flavobacteriaceae bacterium 3519-10 (50%)
2 1060 bp 64.34 3.55 100.19
13_1_20cm_4_scaffold_239462
Species: GWC1_Treponema_61_84_curated (50%)
2 1078 bp 64.29 7.22 100.19
13_1_20cm_4_scaffold_239474
Species: Pseudoalteromonas sp. BSi20652 (50%)
2 1078 bp 66.70 6.29 100.19
13_1_20cm_4_scaffold_237447
Species: R_Gemmatimonadetes_71_11 (50%)
2 1084 bp 55.63 2.78 100.18
13_1_20cm_4_scaffold_236333
Species: GWA2_Gallionellales_60_142_curated (50%)
2 1087 bp 66.15 3.00 100.18
Displaying items 151-200 of 3728 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.