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13_1_20CM_4_Bacteriodetes_60_6

13_1_20CM_4_Bacteria_61_7
In projects: 13_1_20CM_4  |  angelo_ncbi_2016  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Bacteria

Metagenomic Context

Parent: 13_1_20cm_4_UNK

Properties

Avg. coverage: 6.87 Longest contig: 25.24 Kbp Bin length: 5.94 Mbp GC content: 60.62 %
Contigs count: 3728 Features count: 6853 rRNAs count: 0 tRNAs count: 10

Genome completeness

partial RP 12 / 55 MC: 1 BSCG 11 / 51 MC: 2 ASCG 5 / 38 MC: 1

Description

<1 partial genome-CB

Displaying items 3501-3550 of 3728 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_20cm_4_scaffold_33442
Domain: Bacteria (66.67%)
3 3274 bp 70.49 8.59 100.15
13_1_20cm_4_scaffold_167903
Species: Rhodothermus marinus (50%)
2 1294 bp 66.62 13.58 100.16
13_1_20cm_4_scaffold_168941
Species: marine sediment metagenome (100%)
2 1291 bp 57.78 9.92 100.16
13_1_20cm_4_scaffold_67160
Species: Salinibacter ruber (50%)
2 1926 bp 73.10 15.77 100.16
13_1_20cm_4_scaffold_171716
Species: Spirosoma linguale (50%)
2 1282 bp 54.91 4.31 100.16
13_1_20cm_4_scaffold_172566
Species: RLO_RIF_CHLX_71_12 (50%)
2 1279 bp 68.96 6.08 100.16
13_1_20cm_4_scaffold_173312
Species: RBG_16_Gemmatimonadetes_66_8_curated (100%)
2 1276 bp 70.69 5.11 100.16
13_1_20cm_4_scaffold_173339
Species: Fibrisoma limi (50%)
2 1276 bp 56.03 7.67 100.16
13_1_20cm_4_scaffold_175338
Species: Chthonomonas calidirosea (50%)
2 1270 bp 72.28 12.06 100.16
13_1_20cm_4_scaffold_179856
Species: R_Gemmatimonadetes_71_11 (50%)
2 1255 bp 70.68 7.80 100.16
13_1_20cm_4_scaffold_181776
Species: Rhodothermus marinus (50%)
2 1249 bp 68.61 13.87 100.16
13_1_20cm_4_scaffold_187473
Species: Haliscomenobacter hydrossis (50%)
2 1231 bp 65.96 3.67 100.16
13_1_20cm_4_scaffold_187545
Species: Chryseobacterium gleum (50%)
2 1231 bp 66.69 6.52 100.16
13_1_20cm_4_scaffold_193584
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1213 bp 63.31 3.10 100.16
13_1_20cm_4_scaffold_196376
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (50%)
2 1204 bp 69.77 5.00 100.17
13_1_20cm_4_scaffold_41565
Domain: Bacteria (100%)
3 2363 bp 54.13 8.29 100.17
13_1_20cm_4_scaffold_204466
Species: uncultured bacterium (100%)
2 1180 bp 58.14 8.08 100.17
13_1_20cm_4_scaffold_82101
Species: GWF2_Bacteroidetes_40_14_curated (50%)
2 1767 bp 67.46 7.10 100.17
13_1_20cm_4_scaffold_84381
Species: R_Acidobacteria_67_21 (50%)
2 1746 bp 73.08 11.50 100.17
13_1_20cm_4_scaffold_210932
Species: mine drainage metagenome (50%)
2 1162 bp 69.10 6.48 100.17
13_1_20cm_4_scaffold_213729
Species: R_Acidobacteria_67_28 (50%)
2 1153 bp 53.77 3.92 100.17
13_1_20cm_4_scaffold_214746
Species: Nafulsella turpanensis (50%)
2 1150 bp 69.83 4.58 100.17
13_1_20cm_4_scaffold_216740
Species: marine sediment metagenome (50%)
2 1144 bp 63.11 3.73 100.18
13_1_20cm_4_scaffold_218760
Species: Thermoanaerobaculum aquaticum (50%)
2 1138 bp 73.20 5.29 100.18
13_1_20cm_4_scaffold_91228
Species: Fibrella aestuarina (50%)
2 1689 bp 70.04 5.65 100.18
13_1_20cm_4_scaffold_223772
Species: Rhodothermus marinus (100%)
2 1123 bp 63.67 6.26 100.18
13_1_20cm_4_scaffold_223785
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1123 bp 73.11 17.21 100.18
13_1_20cm_4_scaffold_91931
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1683 bp 67.56 12.83 100.18
13_1_20cm_4_scaffold_236333
Species: GWA2_Gallionellales_60_142_curated (50%)
2 1087 bp 66.15 3.00 100.18
13_1_20cm_4_scaffold_237447
Species: R_Gemmatimonadetes_71_11 (50%)
2 1084 bp 55.63 2.78 100.18
13_1_20cm_4_scaffold_239462
Species: GWC1_Treponema_61_84_curated (50%)
2 1078 bp 64.29 7.22 100.19
13_1_20cm_4_scaffold_239474
Species: Pseudoalteromonas sp. BSi20652 (50%)
2 1078 bp 66.70 6.29 100.19
13_1_20cm_4_scaffold_245475
Species: Flavobacteriaceae bacterium 3519-10 (50%)
2 1060 bp 64.34 3.55 100.19
13_1_20cm_4_scaffold_106012
Species: Erythrobacter sp. NAP1 (50%)
2 1584 bp 68.94 6.18 100.19
13_1_20cm_4_scaffold_54176
Species: R_Acidobacteria_61_28 (50%)
2 2111 bp 58.50 3.92 100.19
13_1_20cm_4_scaffold_61852
Phylum: Bacteroidetes (66.67%)
3 2638 bp 65.24 13.89 100.19
13_1_20cm_4_scaffold_59235
Species: R_Gemmatimonadetes_71_11 (100%)
2 2030 bp 74.09 13.11 100.20
13_1_20cm_4_scaffold_35464
Species: Gemmatimonadetes bacterium KBS708 (75%)
4 2527 bp 68.50 16.29 100.20
13_1_20cm_4_scaffold_264579
Species: R_Gemmatimonadetes_71_11 (50%)
2 1009 bp 72.94 6.72 100.20
13_1_20cm_4_scaffold_60942
Species: Chondromyces apiculatus (50%)
2 2006 bp 67.60 6.63 100.20
13_1_20cm_4_scaffold_120215
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)
2 1500 bp 64.13 9.20 100.20
13_1_20cm_4_scaffold_120874
Species: GWF2_Bacteroidetes_43_11_curated (50%)
2 1497 bp 71.81 10.40 100.20
13_1_20cm_4_scaffold_66514
Species: RIFOXYC2_FULL_Ignavibacteria_38_25_curated (50%)
2 1934 bp 68.98 9.86 100.21
13_1_20cm_4_scaffold_68485
Species: Hymenobacter sp. DG25B (50%)
2 1910 bp 71.99 14.32 100.21
13_1_20cm_4_scaffold_138226
Species: Haliscomenobacter hydrossis (50%)
2 1410 bp 44.26 3.74 100.21
13_1_20cm_4_scaffold_138318
Species: R_Deltaproteobacteria_43_33 (50%)
2 1410 bp 63.19 5.70 100.21
13_1_20cm_4_scaffold_138362
Species: RBG_13_Acidobacteria_68_16_curated (50%)
2 1410 bp 70.64 9.26 100.21
13_1_20cm_4_scaffold_141651
Species: R_Rokubacteria_68_19 (50%)
2 1395 bp 65.23 7.92 100.22
13_1_20cm_4_scaffold_143168
Species: Flammeovirgaceae bacterium 311 (50%)
2 1389 bp 66.23 2.89 100.22
13_1_20cm_4_scaffold_73622
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
2 1850 bp 71.51 9.90 100.22
Displaying items 3501-3550 of 3728 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.