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13_1_20CM_4_Bacteriodetes_60_6

13_1_20CM_4_Bacteria_61_7
In projects: 13_1_20CM_4  |  angelo_ncbi_2016  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Bacteria

Metagenomic Context

Parent: 13_1_20cm_4_UNK

Properties

Avg. coverage: 6.87 Longest contig: 25.24 Kbp Bin length: 5.94 Mbp GC content: 60.62 %
Contigs count: 3728 Features count: 6853 rRNAs count: 0 tRNAs count: 10

Genome completeness

partial RP 12 / 55 MC: 1 BSCG 11 / 51 MC: 2 ASCG 5 / 38 MC: 1

Description

<1 partial genome-CB

Displaying items 3551-3600 of 3728 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_20cm_4_scaffold_144603
Species: RBG_19FT_COMBO_Chloroflexi_50_10_curated (50%)
2 1383 bp 55.31 6.72 100.22
13_1_20cm_4_scaffold_174072
Species: RBG_16_Chloroflexi_54_18_curated (50%)
2 2296 bp 54.66 6.78 100.22
13_1_20cm_4_scaffold_146063
Species: RLO_Betaproteobacteria_65_14 (50%)
2 1377 bp 55.99 8.93 100.22
13_1_20cm_4_scaffold_148130
Species: Chitinophaga pinensis (50%)
2 1368 bp 44.15 2.39 100.22
13_1_20cm_4_scaffold_148999
Species: RBG_16_Anaeromyxobacter_69_14_curated (50%)
2 1365 bp 70.04 5.52 100.22
13_1_20cm_4_scaffold_151925
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated (100%)
2 1353 bp 65.85 3.90 100.22
13_1_20cm_4_scaffold_78343
Species: R_Gemmatimonadetes_71_11 (50%)
2 1802 bp 68.70 16.85 100.22
13_1_20cm_4_scaffold_156457
Species: GWE2_Bacteroidetes_29_8_curated (50%)
2 1335 bp 32.43 2.63 100.23
13_1_20cm_4_scaffold_159730
Species: Sphingobacterium sp. 21 (50%)
2 1323 bp 64.25 2.28 100.23
13_1_20cm_4_scaffold_161140
Species: marine sediment metagenome (50%)
2 1317 bp 67.05 3.05 100.23
13_1_20cm_4_scaffold_32836
Species: RLO_Betaproteobacteria_65_14 (50%)
4 2607 bp 67.20 20.60 100.23
13_1_20cm_4_scaffold_168197
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1293 bp 70.61 6.60 100.23
13_1_20cm_4_scaffold_88306
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1712 bp 68.05 11.00 100.23
13_1_20cm_4_scaffold_180071
Species: RBG_13_Bacteroidetes_46_8_curated (50%)
2 1254 bp 33.97 2.40 100.24
13_1_20cm_4_scaffold_183012
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1245 bp 70.12 14.52 100.24
13_1_20cm_4_scaffold_185814
Species: RIFOXYD1_FULL_Bdellovibrionales_55_31_curated (50%)
2 1236 bp 56.47 3.66 100.24
13_1_20cm_4_scaffold_98973
Species: Bacteroides clarus (50%)
2 1631 bp 65.36 15.85 100.25
13_1_20cm_4_scaffold_190878
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1221 bp 68.88 11.10 100.25
13_1_20cm_4_scaffold_192749
Species: uncultured bacterium (50%)
2 1215 bp 57.12 5.99 100.25
13_1_20cm_4_scaffold_194920
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1209 bp 68.24 9.76 100.25
13_1_20cm_4_scaffold_109152
Species: BJP_IG2102_Bacteroidetes_40_9 (50%)
2 1565 bp 69.97 9.94 100.26
13_1_20cm_4_scaffold_207069
Species: RBG_16_RIF_WS3X_71_46_curated (100%)
2 1173 bp 67.69 3.00 100.26
13_1_20cm_4_scaffold_215165
Species: Cesiribacter andamanensis (50%)
2 1149 bp 54.74 6.99 100.26
13_1_20cm_4_scaffold_217231
Species: Gloeobacter violaceus (50%)
2 1143 bp 54.33 3.95 100.26
13_1_20cm_4_scaffold_116085
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated (50%)
2 1523 bp 61.26 3.63 100.26
13_1_20cm_4_scaffold_222127
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
2 1128 bp 71.99 22.47 100.27
13_1_20cm_4_scaffold_225276
Species: Desulfovibrio vulgaris (50%)
2 1119 bp 68.10 3.59 100.27
13_1_20cm_4_scaffold_231454
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1101 bp 59.85 2.74 100.27
13_1_20cm_4_scaffold_233316
Species: RBG_16_Gamma2_65_34_curated (50%)
2 1095 bp 59.91 4.13 100.27
13_1_20cm_4_scaffold_236780
Species: Robiginitalea biformata (50%)
2 1086 bp 69.98 5.32 100.28
13_1_20cm_4_scaffold_239561
Species: Balneola vulgaris (50%)
2 1077 bp 63.60 4.89 100.28
13_1_20cm_4_scaffold_239728
Species: Rhodothermus marinus (50%)
2 1077 bp 69.92 12.58 100.28
13_1_20cm_4_scaffold_81031
Species: R_Gemmatimonadetes_71_11 (50%)
2 1777 bp 63.53 8.33 100.28
13_1_20cm_4_scaffold_135987
Species: Flavihumibacter petaseus (50%)
2 1421 bp 43.63 3.00 100.28
13_1_20cm_4_scaffold_245105
Species: GWC2_Pelobacteraceae_58_13_curated (50%)
2 1062 bp 70.62 8.04 100.28
13_1_20cm_4_scaffold_244915
Species: GWF2_Bacteroidetes_43_11_curated (50%)
2 1062 bp 52.64 3.55 100.28
13_1_20cm_4_scaffold_250442
Species: Fibrisoma limi (50%)
2 1047 bp 70.68 9.59 100.29
13_1_20cm_4_scaffold_251441
Species: Pedobacter sp. V48 (50%)
2 1044 bp 60.54 3.37 100.29
13_1_20cm_4_scaffold_255734
Species: GWA2_Bacteroidetes_40_15_curated (50%)
2 1032 bp 68.31 11.43 100.29
13_1_20cm_4_scaffold_147781
Species: Pedobacter sp. BAL39 (50%)
2 1370 bp 66.35 2.56 100.29
13_1_20cm_4_scaffold_123772
Phylum: Acidobacteria (50%)
4 2396 bp 72.70 5.66 100.29
13_1_20cm_4_scaffold_258120
Species: RBG_16_Caldithrix_48_16_curated (50%)
2 1026 bp 70.96 5.63 100.29
13_1_20cm_4_scaffold_148540
Species: Flavihumibacter petaseus (50%)
2 1367 bp 69.64 15.42 100.29
13_1_20cm_4_scaffold_265118
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1008 bp 63.79 2.74 100.30
13_1_20cm_4_scaffold_156043
Species: R_Nitrospirae_62_14 (50%)
2 1337 bp 65.89 3.19 100.30
13_1_20cm_4_scaffold_267291
Species: Marivirga tractuosa (50%)
2 1002 bp 56.49 11.02 100.30
13_1_20cm_4_scaffold_267328
Species: Corallococcus coralloides (50%)
2 1002 bp 64.77 3.26 100.30
13_1_20cm_4_scaffold_157603
Species: GWF2_Verrucomicrobia_62_7_curated (100%)
2 1331 bp 56.05 11.31 100.30
13_1_20cm_4_scaffold_202205
Species: Streptomyces olindensis (50%)
2 1187 bp 75.48 4.44 100.34
13_1_20cm_4_scaffold_210625
Species: Opitutaceae bacterium TAV1 (50%)
2 1163 bp 63.54 3.24 100.34
Displaying items 3551-3600 of 3728 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.