ggKbase home page

13_1_20cm_4_scaffold_129

Search features with annotation key words

Displaying items 1-30 of 45 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_129_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3..425)
DNA (423bp) protein (141aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_20cm_4_scaffold_129_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

512..1555
DNA (1044bp) protein (348aa)
PAS/PAC sensor signal transduction histidine kinase Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_4_scaffold_129_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

1588..3621
DNA (2034bp) protein (678aa)
delta-1-pyrroline-5-carboxylate dehydrogenase (EC:1.5.1.12); K00294 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.1.12] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Delta-1-pyrroline-5-carboxylate dehydrogenase n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IP72_ANADE
delta-1-pyrroline-5-carboxylate dehydrogenase
13_1_20cm_4_scaffold_129_4
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

3582..4088
DNA (507bp) protein (169aa)
lipoprotein Tax=RBG_16_Chloroflexi_64_32_curated
13_1_20cm_4_scaffold_129_5
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(4102..4275)
DNA (174bp) protein (58aa)
Putative uncharacterized protein n=1 Tax=bacterium Ellin514 RepID=B9XPD1_9BACT id=73381 bin=ACD51 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=ACD51 organism_group=PER (Peregrinibacteria) organism_desc=PER
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_20cm_4_scaffold_129_6
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4351..4578)
DNA (228bp) protein (76aa)
Iron sulphur-containing domain, CDGSH-type n=2 Tax=Micromonospora RepID=D9TA87_MICAI
Iron sulphur-containing domain, CDGSH-type {ECO:0000313|EMBL:ADL46400.1}; TaxID=644283 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospor
CDGSH-type iron sulfur domain-containing protein
13_1_20cm_4_scaffold_129_7
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

4628..6154
DNA (1527bp) protein (509aa)
Protein containing DUF255 (Fragment) n=1 Tax=mine drainage metagenome RepID=T1BWE8_9ZZZZ
hypothetical protein; K06888 Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
hypothetical protein
13_1_20cm_4_scaffold_129_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

6183..6728
DNA (546bp) protein (182aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5K6_GEMAT
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AHG92078.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
RNA polymerase sigma factor, sigma-70 family
13_1_20cm_4_scaffold_129_9
Desulfomicrobium baculatum, Desulfomicrobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6725..7360
DNA (636bp) protein (212aa)
Glycoside hydrolase family 13 domain protein n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LU03_DESBD
Glycoside hydrolase family 13 domain protein {ECO:0000313|EMBL:ACU89626.1}; Flags: Precursor;; TaxID=525897 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfomicrobiac
glycoside hydrolase family 13
13_1_20cm_4_scaffold_129_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

7357..8010
DNA (654bp) protein (218aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG92076.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_20cm_4_scaffold_129_11
unknown

Not on your lists

8038..8241
DNA (204bp) protein (68aa)

This feature has no annotations

13_1_20cm_4_scaffold_129_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(8242..9483)
DNA (1242bp) protein (414aa)
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_
rca:Rcas_3355 arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] id=1246557 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1)
13_1_20cm_4_scaffold_129_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

9547..10680
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA53_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Tetratricopeptide TPR_1 repeat-containing protein
13_1_20cm_4_scaffold_129_14
unknown

Not on your lists

comp(10677..11036)
DNA (360bp) protein (120aa)

This feature has no annotations

13_1_20cm_4_scaffold_129_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(11047..11505)
DNA (459bp) protein (153aa)
Cyclic nucleotide-binding domain-containing protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MHI7_CORCM
cyclic nucleotide-binding domain-containing protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
cyclic nucleotide-binding domain-containing protein
13_1_20cm_4_scaffold_129_16
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

11521..12063
DNA (543bp) protein (181aa)
pgsA2; CDP-alcohol phosphatidyltransferase; K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003650ABC
pgsA2; CDP-alcohol phosphatidyltransferase
13_1_20cm_4_scaffold_129_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

12099..12620
DNA (522bp) protein (174aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_4_scaffold_129_18
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

12622..13029
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Enterobacteriaceae bacterium LSJC7 RepID=UPI0003759BEF
OsmC-like protein; K07397 putative redox protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_20cm_4_scaffold_129_19
unknown

Not on your lists

13022..13504
DNA (483bp) protein (161aa)

This feature has no annotations

13_1_20cm_4_scaffold_129_20
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(13558..13827)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA48_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_20cm_4_scaffold_129_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

13941..14255
DNA (315bp) protein (105aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_20cm_4_scaffold_129_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

14252..14935
DNA (684bp) protein (228aa)
DSBA oxidoreductase n=2 Tax=Chloroflexus RepID=A9WGR1_CHLAA
putative oxidoreductase Tax=RBG_16_Gemmatimonadetes_66_8_curated
DSBA oxidoreductase
13_1_20cm_4_scaffold_129_23
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

14935..15405
DNA (471bp) protein (157aa)
Vitamin K epoxide reductase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2P1_CONWI
vitamin K epoxide reductase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
vitamin K epoxide reductase
13_1_20cm_4_scaffold_129_24
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(15341..17287)
DNA (1947bp) protein (649aa)
acs; acetyl-coenzyme A synthetase (EC:6.2.1.1); K01895 acetyl-CoA synthetase [EC:6.2.1.1] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Acetyl-coenzyme A synthetase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=ACSA_GEMAT
Acetyl-coenzyme A synthetase
13_1_20cm_4_scaffold_129_25
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

17455..17796
DNA (342bp) protein (114aa)
Anti-sigma factor antagonist n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FI22_DESAA
anti-sigma-factor antagonist
Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_20cm_4_scaffold_129_26
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

17811..18173
DNA (363bp) protein (121aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C1V3_DESTA id=5223401 bin=16ft_combo_ws3_JS1 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
two-component response regulator protein; K15012 two-component system, response regulator RegA Tax=RBG_16_Gemmatimonadetes_66_8_curated
two component sigma-54 specific Fis family transcriptional regulator
13_1_20cm_4_scaffold_129_27
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

18160..18816
DNA (657bp) protein (219aa)
Cytochrome ABC transporter ATP-binding component n=1 Tax=Adlercreutzia equolifaciens DSM 19450 RepID=S6CE22_9ACTN
heme ABC exporter, ATP-binding protein CcmA; K09687 antibiotic transport system ATP-binding protein Tax=GWC2_Gemmatimonadetes_71_10_curated
cytochrome ABC transporter ATP-binding component
13_1_20cm_4_scaffold_129_28
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

18803..19489
DNA (687bp) protein (229aa)
Heme exporter protein CcmB n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA42_GEMAT
ccmB; heme exporter protein CcmB; K02194 heme exporter protein B Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
cytochrome c-type biogenesis protein CcmB
13_1_20cm_4_scaffold_129_29
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

19486..20169
DNA (684bp) protein (228aa)
Heme exporter protein CcmC n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA41_GEMAT
ccmC; heme exporter protein CcmC; K02195 heme exporter protein C Tax=RBG_16_Gemmatimonadetes_66_8_curated
cytochrome c assembly protein
13_1_20cm_4_scaffold_129_30
unknown

Not on your lists

20162..20284
DNA (123bp) protein (41aa)

This feature has no annotations

Displaying items 1-30 of 45 in total

View Taxonomy