ggKbase home page

13_1_40cm_scaffold_454

Search features with annotation key words

Displaying items 1-30 of 31 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_454_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3..629)
DNA (627bp) protein (209aa)
thiamine pyrophosphate protein central region; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Thiamine pyrophosphate protein central region id=4836216 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acetolactate synthase-like TPP-requiring enzyme
13_1_40cm_scaffold_454_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(828..1535)
DNA (708bp) protein (236aa)
putative FMN reductase (EC:1.5.1.29); K00523 CDP-4-dehydro-6-deoxyglucose reductase [EC:1.17.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative FMN reductase (EC:1.5.1.29); K00523 CDP-4-dehydro-6-deoxyglucose reductase [EC:1.17.1.1] id=14625862 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
putative FMN reductase (EC:1.5.1.29)
13_1_40cm_scaffold_454_3
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(1561..1911)
DNA (351bp) protein (117aa)
hypothetical protein id=14627725 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
13_1_40cm_scaffold_454_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(1981..2901)
DNA (921bp) protein (307aa)
Luciferase family protein id=4718543 bin=GWC2_Methylomirabilis_70_24 species=Frankia sp. genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
luciferase family protein Tax=GWA2_Rokubacteria_70_23_curated
putative F420-dependent dehydrogenase
13_1_40cm_scaffold_454_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2898..4958)
DNA (2061bp) protein (687aa)
short chain dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase id=3960006 bin=GWA2_Methylomirabilis_73_35 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short chain dehydrogenase
13_1_40cm_scaffold_454_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(5112..6389)
DNA (1278bp) protein (426aa)
TRAP-type C4-dicarboxylate transport system, large permease component id=4555514 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
TRAP-type C4-dicarboxylate transport system, large permease component Tax=GWC2_Rokubacteria_70_16_curated
TRAP dicarboxylate transporter subunit DctM
13_1_40cm_scaffold_454_7
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6386..6850)
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000369FB95
tripartite AtP-independent periplasmic transporter subunit DctQ Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
TRAP dicarboxylate transporter subunit DctM
13_1_40cm_scaffold_454_8
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6855..7880)
DNA (1026bp) protein (342aa)
Phosphoribosylaminoimidazole synthetase n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FSE1_9RHOB
periplasmic substrate-binding transport protein Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
putative periplasmic substrate-binding transport protein
13_1_40cm_scaffold_454_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7959..8423
DNA (465bp) protein (155aa)
serine/threonine-protein kinase-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14625845 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
serine/threonine-protein kinase-like protein
13_1_40cm_scaffold_454_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

8426..10066
DNA (1641bp) protein (547aa)
o-succinylbenzoate--CoA ligase (EC:6.2.1.26); K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] Tax=GWA2_Rokubacteria_70_23_curated
o-succinylbenzoate--CoA ligase (EC:6.2.1.26)
O-succinylbenzoate--CoA ligase id=3859449 bin=GWF2_Methylomirabilis_70_14 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_454_11
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10146..11420
DNA (1275bp) protein (425aa)
hypothetical protein; K02027 multiple sugar transport system substrate-binding protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Putative uncharacterized protein id=2259308 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar ABC transporter substrate-binding protein
13_1_40cm_scaffold_454_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11424..12359
DNA (936bp) protein (312aa)
Binding-protein-dependent transport systems inner membrane component id=2259310 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. STM 3843 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter permease
13_1_40cm_scaffold_454_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12359..13204
DNA (846bp) protein (282aa)
Binding-protein-dependent transport systems inner membrane component id=3247809 bin=GWF2_Methylomirabilis_70_14 species=Variovorax paradoxus genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport systems inner membrane component; K02026 multiple sugar transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
binding-protein-dependent transport systems inner membrane component
13_1_40cm_scaffold_454_14
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13302..14996)
DNA (1695bp) protein (565aa)
N-acyl-D-aspartate/D-glutamate deacylase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WPJ7_9BURK
N-acyl-D-aspartate/D-glutamate deacylase {ECO:0000313|EMBL:EHR71596.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_0
amidohydrolase 3
13_1_40cm_scaffold_454_15
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(15067..16488)
DNA (1422bp) protein (474aa)
Glu/Leu/Phe/Val dehydrogenase; K00261 glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Glu/Leu/Phe/Val dehydrogenase; K00261 glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] id=14428745 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin3_NC10 organism_group=NC10
Glu/Leu/Phe/Val dehydrogenase
13_1_40cm_scaffold_454_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16515..17192)
DNA (678bp) protein (226aa)
GltK1 id=2259316 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative polar amino acid ABC transporter, inner membrane subunit Tax=GWA2_Rokubacteria_73_35_curated
polar amino acid ABC transporter inner membrane protein
13_1_40cm_scaffold_454_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17418..18137)
DNA (720bp) protein (240aa)
gltJ1; protein GltJ1; K10003 glutamate/aspartate transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GltJ1 id=2259318 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gltJ1; protein GltJ1
13_1_40cm_scaffold_454_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18139..18996)
DNA (858bp) protein (286aa)
gltB1; protein GltB1 (EC:1.4.1.13); K10001 glutamate/aspartate transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gltB1; protein GltB1 (EC:1.4.1.13)
GltB1 id=3247984 bin=GWF2_Methylomirabilis_70_14 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_454_19
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(19009..19749)
DNA (741bp) protein (247aa)
Phosphate-transporting ATPase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Phosphate-transporting ATPase id=14625833 bin=bin7_NC10_sister species=Desulfovibrio africanus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
polar amino acid transport protein, ATP-binding protein
13_1_40cm_scaffold_454_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19749..20249)
DNA (501bp) protein (167aa)
biotin/lipoyl attachment protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Acetyl-CoA carboxylase biotin carboxylase subunit, putative id=2259324 bin=GWA2_Methylomirabilis_73_35 species=Rhodospirillum centenum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Biotin/lipoic acid binding domain protein
13_1_40cm_scaffold_454_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(20246..21742)
DNA (1497bp) protein (499aa)
accC; acetyl CoA carboxylase, biotin carboxylase subunit (EC:6.3.4.14) Tax=GWA2_Rokubacteria_73_35_curated
accC; acetyl CoA carboxylase, biotin carboxylase subunit (EC:6.3.4.14)
Acetyl CoA carboxylase, biotin carboxylase subunit id=2259326 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_454_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(21739..23256)
DNA (1518bp) protein (506aa)
aspartate oxidase; K00278 L-aspartate oxidase [EC:1.4.3.16] Tax=GWA2_Rokubacteria_73_35_curated
nadB; L-aspartate oxidase (EC:1.4.3.16)
thiol-driven fumarate reductase, flavoprotein subunit id=2259330 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_454_23
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(23253..24263)
DNA (1011bp) protein (337aa)
ABC transporter, substrate-binding component Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
ABC transporter, substrate-binding component id=14625731 bin=bin7_NC10_sister species=Sporomusa ovata genus=Sporomusa taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
NMT1/THI5 like domain protein
13_1_40cm_scaffold_454_24
unknown

Not on your lists

24408..24596
DNA (189bp) protein (63aa)

This feature has no annotations

13_1_40cm_scaffold_454_25
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(24603..25400)
DNA (798bp) protein (266aa)
binding-protein-dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
binding-protein-dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein id=14625732 bin=bin7_NC10_sister species=Brevibacillus borstelensis genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
binding-protein-dependent transport systems inner membrane component
13_1_40cm_scaffold_454_26
unknown

Not on your lists

comp(25689..25838)
DNA (150bp) protein (50aa)

This feature has no annotations

13_1_40cm_scaffold_454_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(25835..26608)
DNA (774bp) protein (258aa)
ABC transporter-like protein; K02049 NitT/TauT family transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter related protein id=2259336 bin=GWA2_Methylomirabilis_73_35 species=Acetonema longum genus=Acetonema taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter-like protein
13_1_40cm_scaffold_454_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(26605..28152)
DNA (1548bp) protein (516aa)
Putative benzoate-CoA ligase BzlA (Fragment) id=2259338 bin=GWA2_Methylomirabilis_73_35 species=Clostridia bacterium enrichment culture clone BF genus=unknown taxon_order=unknown taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
benzoate-CoA ligase family Tax=GWA2_Rokubacteria_73_35_curated
benzoate-CoA ligase family
13_1_40cm_scaffold_454_29
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(28149..28742)
DNA (594bp) protein (198aa)
Uncharacterized protein id=4124364 bin=GWF2_Methylomirabilis_70_14 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_scaffold_454_30
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(28739..29074)
DNA (336bp) protein (112aa)
Uncharacterized protein id=4124365 bin=GWF2_Methylomirabilis_70_14 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
Displaying items 1-30 of 31 in total

View Taxonomy