ggKbase home page

13_1_40cm_2_scaffold_232

Search features with annotation key words

Displaying items 1-30 of 35 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_232_1
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

Not on your lists

comp(1..789)
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P4K3_9BACT
mglA; Mutual gliding-motility protein; K06883 Tax=RIFOXYC12_FULL_TA06_54_24_curated
MglA protein
13_1_40cm_2_scaffold_232_2
GWC2_Deltaproteobacteria_55_46b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(836..2149)
DNA (1314bp) protein (438aa)
engA; GTP-binding protein EngA; K03977 GTP-binding protein id=15192682 bin=GWC2_NOV_55_46 species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
engA; GTP-binding protein EngA; K03977 GTP-binding protein Tax=GWC2_Deltaproteobacteria_55_46b_curated
GTP-binding protein engA
13_1_40cm_2_scaffold_232_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

2306..2518
DNA (213bp) protein (71aa)
histone-like DNA-binding protein; K03530 DNA-binding protein HU-beta Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
13_1_40cm_2_scaffold_232_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

2595..3539
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=unclassified Aminicenantes RepID=UPI00036DD4B6
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
peptidase M50
13_1_40cm_2_scaffold_232_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(3511..5979)
DNA (2469bp) protein (823aa)
Metallo-beta-lactamase superfamily Tax=GWC2_Rokubacteria_70_16_curated
Putative Metallo-beta-lactamase superfamily id=4801443 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ComE-like competence protein
13_1_40cm_2_scaffold_232_6
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(6116..6829)
DNA (714bp) protein (238aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IVF8_KORVE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
hypothetical protein
13_1_40cm_2_scaffold_232_7
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6826..7593)
DNA (768bp) protein (256aa)
Pantothenate kinase {ECO:0000313|EMBL:AKF81417.1}; EC=2.7.1.33 {ECO:0000313|EMBL:AKF81417.1};; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myx
Type III pantothenate kinase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=COAX_KORVE
pantothenate kinase
13_1_40cm_2_scaffold_232_8
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7610..8422)
DNA (813bp) protein (271aa)
Biotin-[acetyl-CoA-carboxylase] ligase n=1 Tax=Bacillus stratosphericus LAMA 585 RepID=M5R9R8_9BACI
bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor
Tax=BJP_IG2102_Syntrophobacterales_60_12
13_1_40cm_2_scaffold_232_9
Thermus filiformis, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(8419..9270)
DNA (852bp) protein (284aa)
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase n=1 Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NN76_MARHT
Nicotinate-nucleotide pyrophosphorylase {ECO:0000313|EMBL:KIX84544.1}; TaxID=276 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus filiformis.;"
13_1_40cm_2_scaffold_232_10
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

9687..12776
DNA (3090bp) protein (1030aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H713_ANADF
Cna B domain-containing protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
hypothetical protein
13_1_40cm_2_scaffold_232_11
Xanthomonas hortorum, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12755..13090
DNA (336bp) protein (112aa)
Oar protein n=1 Tax=Xanthomonas hortorum pv. carotae str. M081 RepID=V7Z780_9XANT
Oar protein {ECO:0000313|EMBL:ETC82517.1}; TaxID=863365 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas hortorum pv. carot
TonB-dependent outer membrane receptor precursor
13_1_40cm_2_scaffold_232_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(13101..13394)
DNA (294bp) protein (98aa)
valS; valyl-tRNA synthetase ValS (EC:6.1.1.9) Tax=RBG_16_RIF_WS3X_71_46_curated
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LD66_THEPS id=5223836 bin=16ft_combo_ws3_JS1 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
13_1_40cm_2_scaffold_232_13
RBG_13_Deltaproteobacteria_58_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13573..15717)
DNA (2145bp) protein (715aa)
valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] Tax=RBG_13_Deltaproteobacteria_58_19_curated
Valine--tRNA ligase n=2 Tax=Geobacter metallireducens RepID=Q39X26_GEOMG
valS; valyl-tRNA ligase
13_1_40cm_2_scaffold_232_14
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(15825..17054)
DNA (1230bp) protein (410aa)
Response regulator n=3 Tax=Myxococcus xanthus RepID=Q1D3Z1_MYXXD
response regulator Tax=RBG_13_Acidobacteria_68_16_curated
response regulator
13_1_40cm_2_scaffold_232_15
unknown

Not on your lists

comp(17029..17556)
DNA (528bp) protein (176aa)

This feature has no annotations

13_1_40cm_2_scaffold_232_16
unknown

Not on your lists

comp(17553..17939)
DNA (387bp) protein (129aa)

This feature has no annotations

13_1_40cm_2_scaffold_232_17
CG_Delta_02, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17986..18396)
DNA (411bp) protein (137aa)
methylmalonyl-CoA mutase-like protein; K01849 methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] Tax=CG_Delta_02
methylmalonyl-CoA mutase-like protein; K01849 methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] id=14425886 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
cobalamin B12-binding domain-containing protein
13_1_40cm_2_scaffold_232_18
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(18398..20089)
DNA (1692bp) protein (564aa)
methylmalonyl-CoA mutase (EC:5.4.99.2)
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:AEP11125.1}; EC=5.4.99.2 {ECO:0000313|EMBL:AEP11125.1};; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" s
Methylmalonyl-CoA mutase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGL4_CHLTF
13_1_40cm_2_scaffold_232_19
GWC2_Deltaproteobacteria_65_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20091..21236)
DNA (1146bp) protein (382aa)
acyl-CoA dehydrogenase domain-containing protein; K00248 butyryl-CoA dehydrogenase [EC:1.3.8.1] Tax=GWC2_Deltaproteobacteria_65_14_curated
Acyl-CoA dehydrogenase domain protein id=3661231 bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
CaiA; acyl-CoA dehydrogenase
13_1_40cm_2_scaffold_232_20
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(21241..21798)
DNA (558bp) protein (186aa)
Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Flexistipes sinusarabici (strain DSM 4947 / MAS 10) RepID=F8E5L3_FLESM
Ribosomal subunit interface protein {ECO:0000313|EMBL:CDM66192.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
sigma 54 modulation protein/30S ribosomal protein S30EA
13_1_40cm_2_scaffold_232_21
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(21831..23291)
DNA (1461bp) protein (487aa)
rpoN; RNA polymerase sigma-54 factor RpoN; K03092 RNA polymerase sigma-54 factor Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
sigma-54 (RpoN); K03092 RNA polymerase sigma-54 factor id=12554063 bin=CNBR_ACIDO species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rpoN; RNA polymerase sigma-54 factor RpoN
13_1_40cm_2_scaffold_232_22
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(23347..24120)
DNA (774bp) protein (258aa)
ABC transporter related protein n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8UZA8_TERSS
ABC transporter-like protein
ABC transporter related protein {ECO:0000313|EMBL:ADV82126.1}; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain
13_1_40cm_2_scaffold_232_23
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(24098..25915)
DNA (1818bp) protein (606aa)
hypothetical protein n=1 Tax=Thermodesulfatator atlanticus RepID=UPI0003B78481
Uncharacterized protein {ECO:0000313|EMBL:CDM66189.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
13_1_40cm_2_scaffold_232_24
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(25924..26709)
DNA (786bp) protein (262aa)
crt; 3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.55); K01715 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
short chain enoyl-CoA hydratase (EC:4.2.1.17); K01715 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] id=16783855 bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
crt; 3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.55)
13_1_40cm_2_scaffold_232_25
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(26737..27627)
DNA (891bp) protein (297aa)
3-hydroxybutyryl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ISD6_KORVE
3-hydroxyacyl-CoA dehydrogenase
13_1_40cm_2_scaffold_232_26
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(27672..28886)
DNA (1215bp) protein (405aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
acetyl-CoA acyltransferase (EC:2.3.1.16); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] id=24556552 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Euryarchaeota tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
acetyl-CoA acetyltransferase (EC:2.3.1.9)
13_1_40cm_2_scaffold_232_27
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(28883..29668)
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003703CC9
IstB domain-containing protein ATP-binding protein; K02315 DNA replication protein DnaC Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
dnaI; primosomal protein dnaI
13_1_40cm_2_scaffold_232_28
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(29694..30557)
DNA (864bp) protein (288aa)
RNA polymerase sigma-32 subunit RpoH; K03086 RNA polymerase primary sigma factor Tax=RBG_13_OP8X_37_8_curated
sigma-70 family RNA polymerase sigma factor id=16858053 bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
RNA polymerase sigma-70 subunit RpoD
13_1_40cm_2_scaffold_232_29
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(30561..30923)
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035ECCA9
merR; MerR family transcriptional regulator; K13640 MerR family transcriptional regulator, heat shock protein HspR Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
MerR family transcriptional regulator
13_1_40cm_2_scaffold_232_30
GWA2_RIF03_38_11_curated, RIF3, Bacteria

Not on your lists

comp(30982..32109)
DNA (1128bp) protein (376aa)
dnaJ; chaperone protein dnaJ, heat shock protein (Hsp40), co-chaperone with dnaK Tax=GWA2_RIF03_38_11_curated
dnaJ; chaperone protein dnaJ, heat shock protein (Hsp40), co-chaperone with dnaK id=14431068 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
dnaJ; chaperone protein dnaJ, heat shock protein (Hsp40), co-chaperone with dnaK
Displaying items 1-30 of 35 in total

View Taxonomy