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13_1_40cm_4_scaffold_711

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Displaying items 1-30 of 32 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_711_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(3..1340)
DNA (1338bp) protein (446aa)
ntrC; nitrogen regulation protein NR(I); K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative Nitrogen assimilation transcription regulatory protein (NtrC)(Synonyms:glnT, glnG) id=2650854 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gnfM; nitrogen fixation master sigma-54-dependent transcriptional response regulator
13_1_40cm_4_scaffold_711_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1340..2416)
DNA (1077bp) protein (359aa)
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3); K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] Tax=RIFCSPLOWO2_12
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3); K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] id=14627408 bin=bin7_NC10_sister species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3)
13_1_40cm_4_scaffold_711_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(2413..3417)
DNA (1005bp) protein (335aa)
O-sialoglycoprotein endopeptidase; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
O-sialoglycoprotein endopeptidase; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] id=14627409 bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
O-sialoglycoprotein endopeptidase
13_1_40cm_4_scaffold_711_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(3439..4695)
DNA (1257bp) protein (419aa)
ctpA; Carboxy-terminal-processing protease (C-terminal-processing protease) (EC:3.4.21.102) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ctpA; Carboxy-terminal-processing protease (C-terminal-processing protease) (EC:3.4.21.102) id=14627410 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ctpA; Carboxy-terminal-processing protease (C-terminal-processing protease) (EC:3.4.21.102)
13_1_40cm_4_scaffold_711_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(4709..5905)
DNA (1197bp) protein (399aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Uncharacterized protein id=4795609 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_711_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5902..6786)
DNA (885bp) protein (295aa)
cell division protein FtsX; K09811 cell division transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Cell division protein FtsX id=4608922 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Cell division protein FtsX
13_1_40cm_4_scaffold_711_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(6787..7164)
DNA (378bp) protein (126aa)
cell division ATP-binding protein FtsE Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Cell division ATP-binding protein FtsE id=2650604 bin=GWF2_Methylomirabilis_70_14 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cell division ATP-binding protein FtsE
13_1_40cm_4_scaffold_711_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7464..8936)
DNA (1473bp) protein (491aa)
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) (EC:6.3.5.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) (EC:6.3.5.-) id=14627414 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) (EC:6.3.5.-)
13_1_40cm_4_scaffold_711_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8933..10408)
DNA (1476bp) protein (492aa)
gatA; glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) (EC:6.3.5.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gatA; glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) (EC:6.3.5.-)
Glutamyl-tRNA(Gln) amidotransferase subunit A id=2650598 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_711_10
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(10398..10685)
DNA (288bp) protein (96aa)
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-) id=14627416 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-)
13_1_40cm_4_scaffold_711_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10685..12850)
DNA (2166bp) protein (722aa)
uvrD; DNA helicase II (EC:3.6.1.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
uvrD; DNA helicase II (EC:3.6.1.-) id=14627418 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
uvrD; DNA helicase II (EC:3.6.1.-)
13_1_40cm_4_scaffold_711_12
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12870..13139)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JAI3_ANAD2
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
hypothetical protein
13_1_40cm_4_scaffold_711_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13244..15085)
DNA (1842bp) protein (614aa)
glmS; L-glutamine:D-fructose-6-phosphate aminotransferase (EC:2.6.1.16) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glmS; L-glutamine:D-fructose-6-phosphate aminotransferase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] id=4783126 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_711_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15088..16464)
DNA (1377bp) protein (459aa)
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate
UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase id=4608909 bin=GWC2_Methylomirabilis_70_24 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
13_1_40cm_4_scaffold_711_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16549..17478)
DNA (930bp) protein (310aa)
RluA family pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pseudouridine synthase id=4608907 bin=GWC2_Methylomirabilis_70_24 species=Sporolactobacillus inulinus genus=Sporolactobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
pseudouridine synthase
13_1_40cm_4_scaffold_711_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17475..17960)
DNA (486bp) protein (162aa)
lspA; lipoprotein signal peptidase (EC:3.4.23.36) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lspA; lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase id=4006792 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_711_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17957..20779)
DNA (2823bp) protein (941aa)
ileS; isoleucine tRNA synthetase (EC:6.1.1.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ileS; isoleucine tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase id=4006793 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_711_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(20803..21411)
DNA (609bp) protein (203aa)
Uncharacterized protein id=3372452 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_711_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21508..23019)
DNA (1512bp) protein (504aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Hypothetical membrane protein id=3372616 bin=GWA2_Methylomirabilis_73_35 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_711_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(22958..24592)
DNA (1635bp) protein (545aa)
Putative uncharacterized protein id=3372618 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
glycosyl transferase
13_1_40cm_4_scaffold_711_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24609..24791)
DNA (183bp) protein (61aa)
hypothetical protein; K03116 sec-independent protein translocase protein TatA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sec-independent protein translocase protein TatA id=3372620 bin=GWA2_Methylomirabilis_73_35 species=Chlorobaculum parvum genus=Chlorobaculum taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_711_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24831..26744)
DNA (1914bp) protein (638aa)
selenocysteine-specific translation elongation factor (EC:2.7.7.4); K03833 selenocysteine-specific elongation factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
selenocysteine-specific translation elongation factor (EC:2.7.7.4); K03833 selenocysteine-specific elongation factor id=14627377 bin=bin7_NC10_sister species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
selenocysteine-specific translation elongation factor (EC:2.7.7.4)
13_1_40cm_4_scaffold_711_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(26862..28268)
DNA (1407bp) protein (469aa)
L-seryl-tRNA(Sec) selenium transferase (EC:2.9.1.1); K01042 L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
L-seryl-tRNA(Sec) selenium transferase (EC:2.9.1.1)
L-seryl-tRNA(Sec) selenium transferase id=3372624 bin=GWA2_Methylomirabilis_73_35 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_711_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(28258..28548)
DNA (291bp) protein (97aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=3372626 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_711_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(28545..29030)
DNA (486bp) protein (162aa)
id=2650396 Tax=GWA2_Rokubacteria_73_35_curated
id=2650396 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_711_26
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(29008..29535)
DNA (528bp) protein (176aa)
hypothetical protein id=14627381 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_4_scaffold_711_trna_1
unknown

Not on your lists

comp(29550..29643)
DNA (94bp)
transferRNA
13_1_40cm_4_scaffold_711_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

29675..30592
DNA (918bp) protein (306aa)
ribonuclease BN; K07058 membrane protein Tax=GWA2_Rokubacteria_73_35_curated
Ribonuclease BN id=5027495 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribonuclease BN
13_1_40cm_4_scaffold_711_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(30777..32093)
DNA (1317bp) protein (439aa)
putative lytic murein transglycosylase (EC:3.2.1.-)
soluble lytic murein transglycosylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Soluble lytic murein transglycosylase id=5027497 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_711_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

32310..32729
DNA (420bp) protein (140aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14627385 bin=bin7_NC10_sister species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin7_NC10_sister organism_group=NC10
Displaying items 1-30 of 32 in total

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