ggKbase home page

13_1_40cm_4_scaffold_644

Search features with annotation key words

Displaying items 1-30 of 33 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_644_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

2..562
DNA (561bp) protein (187aa)
Integral membrane protein TerC id=4290026 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
integral membrane protein TerC Tax=GWC2_Rokubacteria_70_16_curated
integral membrane protein TerC
13_1_40cm_4_scaffold_644_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

565..1482
DNA (918bp) protein (306aa)
binding-protein-dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Binding-protein-dependent transport systems inner membrane component id=1924020 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
13_1_40cm_4_scaffold_644_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1598..2353
DNA (756bp) protein (252aa)
binding-protein-dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Binding-protein-dependent transport systems inner membrane component id=1924018 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
13_1_40cm_4_scaffold_644_4
unknown

Not on your lists

comp(2367..2522)
DNA (156bp) protein (52aa)

This feature has no annotations

13_1_40cm_4_scaffold_644_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2668..5415
DNA (2748bp) protein (916aa)
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Extracellular solute-binding protein family 5 id=1924016 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidohydrolase
13_1_40cm_4_scaffold_644_6
unknown

Not on your lists

5412..5906
DNA (495bp) protein (165aa)

This feature has no annotations

13_1_40cm_4_scaffold_644_7
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

5903..6688
DNA (786bp) protein (262aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DIS2_SINAD
Methyltransferase type 11 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
methylase
13_1_40cm_4_scaffold_644_8
unknown

Not on your lists

6685..7107
DNA (423bp) protein (141aa)

This feature has no annotations

13_1_40cm_4_scaffold_644_9
unknown

Not on your lists

7064..7399
DNA (336bp) protein (112aa)

This feature has no annotations

13_1_40cm_4_scaffold_644_10
unknown

Not on your lists

7401..7700
DNA (300bp) protein (100aa)

This feature has no annotations

13_1_40cm_4_scaffold_644_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7735..8607
DNA (873bp) protein (291aa)
dihydrouridine synthase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
tRNA-dihydrouridine synthase id=3938344 bin=GWF2_Methylomirabilis_70_14 species=Clostridium clariflavum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nifR3; TIM barrel oxidoreductase NifR3
13_1_40cm_4_scaffold_644_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8604..9053
DNA (450bp) protein (150aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=4813748 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
monoamine oxidase regulatory protein
13_1_40cm_4_scaffold_644_13
unknown

Not on your lists

comp(9035..10075)
DNA (1041bp) protein (347aa)

This feature has no annotations

13_1_40cm_4_scaffold_644_14
unknown

Not on your lists

comp(10027..10215)
DNA (189bp) protein (63aa)

This feature has no annotations

13_1_40cm_4_scaffold_644_15
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10383..11168
DNA (786bp) protein (262aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
hypothetical protein
Putative uncharacterized protein id=3426809 bin=GWF2_Nitrospirae_44_13 species=Calditerrivibrio nitroreducens genus=Calditerrivibrio taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
13_1_40cm_4_scaffold_644_16
Calditerrivibrio nitroreducens, Calditerrivibrio, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

11165..13918
DNA (2754bp) protein (918aa)
hypothetical protein n=1 Tax=Desulfospira joergensenii RepID=UPI0003B77D6C
cyclic nucleotide-binding protein
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:ADR18418.1}; Flags: Precursor;; TaxID=768670 species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae.;" source="Calditerrivibrio n
13_1_40cm_4_scaffold_644_17
Methylomicrobium alcaliphilum, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13991..14566
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Methylomicrobium buryatense RepID=UPI0003480855
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE23000.1}; TaxID=1091494 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicro
13_1_40cm_4_scaffold_644_18
Methylomicrobium alcaliphilum, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14569..15780
DNA (1212bp) protein (404aa)
Delta(14)-sterol reductase {ECO:0000313|EMBL:CCE23001.1}; EC=1.3.1.70 {ECO:0000313|EMBL:CCE23001.1};; TaxID=1091494 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococc
Delta(14)-sterol reductase n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4SW86_META2
erg; delta(14)-sterol reductase
13_1_40cm_4_scaffold_644_19
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15782..17116
DNA (1335bp) protein (445aa)
Monooxygenase family protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FPJ5_STIAD
monooxygenase family protein
Monooxygenase family protein {ECO:0000313|EMBL:ADO73190.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source
13_1_40cm_4_scaffold_644_20
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17113..18219
DNA (1107bp) protein (369aa)
Flavoprotein monooxygenase n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QJM1_9DELT
Flavoprotein monooxygenase {ECO:0000313|EMBL:EPX56658.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source=
geranylgeranyl reductase
13_1_40cm_4_scaffold_644_21
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18203..20074)
DNA (1872bp) protein (624aa)
hypothetical protein n=1 Tax=Methylococcus capsulatus RepID=UPI000375554C
squalene cyclase
Squalene cyclase family protein {ECO:0000313|EMBL:AAU91075.1}; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methyloc
13_1_40cm_4_scaffold_644_22
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20133..21203)
DNA (1071bp) protein (357aa)
Dioxygenase, iron-sulfur subunit, putative n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FX87_9DELT
Vanillate O-demethylase oxygenase subunit {ECO:0000313|EMBL:AKF09144.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.
dioxygenase, iron-sulfur subunit
13_1_40cm_4_scaffold_644_23
Enhygromyxa salina, Enhygromyxa, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21200..22615)
DNA (1416bp) protein (472aa)
Cytochrome P450 51 n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G0E4_9DELT
Cytochrome P450 51 {ECO:0000313|EMBL:KIG16756.1}; TaxID=215803 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Enhygromyxa.;" source="Enhygromyxa salina.;"
cyp; Lanosterol 14-alpha demethylase
13_1_40cm_4_scaffold_644_24
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22612..23610)
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI00036EE564
Hydroxymethylglutaryl-CoA reductase {ECO:0000313|EMBL:AKF09145.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" sou
nucleoside diphosphate sugar epimerase
13_1_40cm_4_scaffold_644_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23697..24455
DNA (759bp) protein (253aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2720981 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_644_26
Streptomyces pluripotens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24660..24890
DNA (231bp) protein (77aa)
Uncharacterized protein n=2 Tax=Ralstonia RepID=E2SSU8_9RALS
Uncharacterized protein {ECO:0000313|EMBL:KIE34518.1}; TaxID=1355015 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces pluripotens.;"
hypothetical protein
13_1_40cm_4_scaffold_644_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24892..25791)
DNA (900bp) protein (300aa)
oxidoreductase, aryl-alcohol dehydrogenase like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aldo/keto reductase id=3139747 bin=GWF2_Methylomirabilis_70_14 species=Paenibacillus elgii genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oxidoreductase, aryl-alcohol dehydrogenase like protein
13_1_40cm_4_scaffold_644_28
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25791..26876)
DNA (1086bp) protein (362aa)
Uncharacterized protein n=2 Tax=Geobacter metallireducens RepID=Q39PY1_GEOMG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB33693.1}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallire
13_1_40cm_4_scaffold_644_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(26911..28014)
DNA (1104bp) protein (368aa)
Low-specificity threonine aldolase id=4813750 bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium FLS18 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alanine racemase domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
alanine racemase domain-containing protein
13_1_40cm_4_scaffold_644_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

28077..29237
DNA (1161bp) protein (387aa)
sgaA; serine--glyoxylate aminotransferase SgaA (EC:2.6.1.45); K00830 alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] Tax
serine--glyoxylate aminotransferase (EC:2.6.1.45)
Serine-glyoxylate aminotransferase; Alanine-glyoxylate aminotransferase; Serine-pyruvate aminotransferase id=4813751 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying items 1-30 of 33 in total

View Taxonomy