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13_2_20cm_scaffold_63

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Displaying items 1-30 of 45 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_63_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

1..132
DNA (132bp) protein (44aa)
id=14626574 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
id=3735764 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_63_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

139..1026
DNA (888bp) protein (296aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=3735765 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_63_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1023..5399
DNA (4377bp) protein (1459aa)
chloride channel Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Conserved putative chloride channel id=3735766 bin=GWC2_Methylomirabilis_70_16 species=Syntrophomonas wolfei genus=Syntrophomonas taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
chloride channel
13_2_20cm_scaffold_63_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

5399..6751
DNA (1353bp) protein (451aa)
peptidase S1 and S6 chymotrypsin/Hap; K12600 superkiller protein 3 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=14625358 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_63_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6741..6875)
DNA (135bp) protein (45aa)
Glutaredoxin-like protein, YruB-family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_2_20cm_scaffold_63_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7077..8078
DNA (1002bp) protein (334aa)
galactose-1-phosphate uridylyltransferase; K00965 UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Galactose-1-phosphate uridylyltransferase id=3714124 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
galactose-1-phosphate uridylyltransferase
13_2_20cm_scaffold_63_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8358..8789
DNA (432bp) protein (144aa)
putative transcription factor IscR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative transcription factor IscR id=14625361 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
BadM/Rrf2 family transcriptional regulator
13_2_20cm_scaffold_63_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8804..10030
DNA (1227bp) protein (409aa)
iscS; cysteine desulfurase (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
iscS; cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase id=3714107 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_scaffold_63_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

10043..10456
DNA (414bp) protein (138aa)
FeS cluster assembly scaffold IscU Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
iscU; iron-sulfur cluster assembly protein IscU; K04488 nitrogen fixation protein NifU and related proteins id=14625363 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
iscU; iron-sulfur cluster assembly protein IscU
13_2_20cm_scaffold_63_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10473..10802
DNA (330bp) protein (110aa)
iscA; iron-sulfur cluster assembly protein IscA; K13628 iron-sulfur cluster assembly protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Iron-sulfur cluster assembly protein IscA id=3714096 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
iron-sulfur cluster assembly accessory protein
13_2_20cm_scaffold_63_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10886..11476
DNA (591bp) protein (197aa)
hscB; co-chaperone protein HscB; K04082 molecular chaperone HscB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Co-chaperone protein HscB (Hsc20) id=3714094 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hscB; co-chaperone protein HscB
13_2_20cm_scaffold_63_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11454..13286
DNA (1833bp) protein (611aa)
hscA; chaperone protein HscA; K04043 molecular chaperone DnaK Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hscA; chaperone protein HscA; K04043 molecular chaperone DnaK id=14625366 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10 rbh
hscA; chaperone protein HscA
13_2_20cm_scaffold_63_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13286..13609
DNA (324bp) protein (108aa)
fdx; ferredoxin, 2Fe-2S type, ISC system; K04755 ferredoxin, 2Fe-2S Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ferredoxin, 2Fe-2S type, ISC system id=3714016 bin=GWA2_Methylomirabilis_73_35 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
fdx; ferredoxin, 2Fe-2S type, ISC system
13_2_20cm_scaffold_63_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13606..13809
DNA (204bp) protein (68aa)
FeS assembly protein IscX Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=3714014 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_63_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13863..14087)
DNA (225bp) protein (75aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3714012 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_63_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14087..14482)
DNA (396bp) protein (132aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=3714010 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_63_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14502..14825)
DNA (324bp) protein (108aa)
Putative uncharacterized protein id=3714008 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_scaffold_63_18
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

14868..16025
DNA (1158bp) protein (386aa)
iscS; cysteine desulfurase (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase id=4206292 bin=GWF2_Methylomirabilis_70_14 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_scaffold_63_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16022..16402
DNA (381bp) protein (127aa)
FeS cluster assembly scaffold protein NifU; K04488 nitrogen fixation protein NifU and related proteins Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
nifU; FeS cluster assembly scaffold protein NifU; K04488 nitrogen fixation protein NifU and related proteins id=14625373 bin=bin7_NC10_sister species=Oscillibacter sp. 1-3 genus=Oscillibacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
nitrogen fixation protein NifU and related proteins
13_2_20cm_scaffold_63_20
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

16395..17057
DNA (663bp) protein (221aa)
cysE; serine acetyltransferase (EC:2.3.1.30) id=14625374 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
cysE; serine acetyltransferase (EC:2.3.1.30) Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
cysE; serine acetyltransferase (EC:2.3.1.30)
13_2_20cm_scaffold_63_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17054..17233
DNA (180bp) protein (60aa)
Excisionase/Xis, DNA-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Excisionase/Xis, DNA-binding protein id=4848467 bin=GWA2_Methylomirabilis_73_35 species=Nitrosococcus oceani genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_63_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17230..17793
DNA (564bp) protein (188aa)
metal dependent phosphohydrolase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Metal dependent phosphohydrolase id=4848465 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metal dependent phosphohydrolase
13_2_20cm_scaffold_63_23
Mesorhizobium sp. LSHC414A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17960..18883
DNA (924bp) protein (308aa)
UPI0003CF656F related cluster n=1 Tax=unknown RepID=UPI0003CF656F
Uncharacterized protein {ECO:0000313|EMBL:ESX79996.1}; TaxID=1287287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
taurine catabolism dioxygenase
13_2_20cm_scaffold_63_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

18976..19731
DNA (756bp) protein (252aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4848419 bin=GWA2_Methylomirabilis_73_35 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_2_20cm_scaffold_63_25
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

19735..20724
DNA (990bp) protein (330aa)
Uncharacterized protein id=3782407 bin=GWF2_Methylomirabilis_70_14 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_2_20cm_scaffold_63_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

20829..21044
DNA (216bp) protein (72aa)
biotin/lipoic acid binding domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Biotin/lipoyl attachment domain-containing protein id=4748228 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
biotin/lipoyl attachment domain-containing protein
13_2_20cm_scaffold_63_27
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

21055..21558
DNA (504bp) protein (168aa)
DinB family protein id=14625385 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
DinB family protein Tax=CSP1_6_Rokubacteria
DinB family protein
13_2_20cm_scaffold_63_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(21682..23175)
DNA (1494bp) protein (498aa)
RNA polymerase sigma factor RpoD-like; K03086 RNA polymerase primary sigma factor Tax=GWA2_Rokubacteria_73_35_curated
RNA polymerase sigma factor id=3388592 bin=GWC2_Methylomirabilis_70_24 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rpoD; RNA polymerase sigma factor rpoD
13_2_20cm_scaffold_63_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23753..25186
DNA (1434bp) protein (478aa)
malate dehydrogenase; K00027 malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
malate dehydrogenase (EC:1.1.1.38)
Malate dehydrogenase (Oxaloacetate decarboxylating) id=4153740 bin=GWC2_Methylomirabilis_70_16 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_63_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25183..25905
DNA (723bp) protein (241aa)
glycosyl transferase family 2 protein (EC:2.4.1.-); K00729 dolichyl-phosphate beta-glucosyltransferase [EC:2.4.1.117] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glycosyl transferase family 2 protein (EC:2.4.1.-)
Glycosyl transferase, family 2 id=2265642 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Displaying items 1-30 of 45 in total

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