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13_2_20cm_2_scaffold_1839

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Displaying 27 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_1839_1
Syntrophobacter fumaroxidans, Syntrophobacter, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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172..1173
DNA (1002bp) protein (334aa)
Putative uncharacterized protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LGN0_SYNFM
uroporphyrinogen III C-methyltransferase
Uncharacterized protein {ECO:0000313|EMBL:ABK16582.1}; Flags: Precursor;; TaxID=335543 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Syntrophobacte
13_2_20cm_2_scaffold_1839_2
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1328..1861
DNA (534bp) protein (178aa)
Uncharacterized protein {ECO:0000313|EMBL:AKF05516.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandara
13_2_20cm_2_scaffold_1839_3

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2278..2718
DNA (441bp) protein (147aa)
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48375.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
13_2_20cm_2_scaffold_1839_4
unknown

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2732..3139
DNA (408bp) protein (136aa)

This feature has no annotations

13_2_20cm_2_scaffold_1839_5
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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3287..3583
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EGS5_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:CCF83887.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source
13_2_20cm_2_scaffold_1839_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3718..4275
DNA (558bp) protein (186aa)
membrane protein n=1 Tax=Pseudomonas fuscovaginae RepID=UPI00036D09B4
Putative membrane protein {ECO:0000313|EMBL:EJL77315.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF31
permease
13_2_20cm_2_scaffold_1839_7
unknown

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4566..4745
DNA (180bp) protein (60aa)

This feature has no annotations

13_2_20cm_2_scaffold_1839_8

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4921..5718
DNA (798bp) protein (266aa)
RNA polymerase sigma factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7Q1_9BACT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
RpoD family RNA polymerase sigma factor
13_2_20cm_2_scaffold_1839_trna_1
unknown

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5879..5960
DNA (82bp)
transferRNA
13_2_20cm_2_scaffold_1839_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6069..6758)
DNA (690bp) protein (230aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|SAAS:SAAS00031329}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|S
Glucose-6-phosphate isomerase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VLF4_9GAMM
phosphate glucokinase
13_2_20cm_2_scaffold_1839_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(6784..7818)
DNA (1035bp) protein (345aa)
Response regulator receiver protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYR0_9BACT
Response regulator receiver protein {ECO:0000313|EMBL:EDY20601.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_2_20cm_2_scaffold_1839_11
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(7873..9297)
DNA (1425bp) protein (475aa)
AMP-dependent synthetase and ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CY54_9BACT rbh
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:EDY21202.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
AMP-dependent synthetase and ligase
13_2_20cm_2_scaffold_1839_12
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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9348..9575
DNA (228bp) protein (76aa)
50S ribosomal protein L31 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CY55_9BACT
rpmE; ribosomal protein L31; K02909 large subunit ribosomal protein L31 Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
rpmE; ribosomal protein L31
13_2_20cm_2_scaffold_1839_13
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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9642..10727
DNA (1086bp) protein (362aa)
Peptide chain release factor 1 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CY56_9BACT
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" sour
peptide chain release factor 1
13_2_20cm_2_scaffold_1839_14
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

10815..11651
DNA (837bp) protein (279aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltra
Release factor glutamine methyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CY64_9BACT
protein-(glutamine-N5) methyltransferase
13_2_20cm_2_scaffold_1839_15
uncultured Verrucomicrobia bacterium, Verrucomicrobia, Bacteria

Not on your lists

11644..12906
DNA (1263bp) protein (421aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylp
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=uncultured Verrucomicrobia bacterium RepID=D2DXT1_9BACT
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
13_2_20cm_2_scaffold_1839_16
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(13188..14159)
DNA (972bp) protein (324aa)
nfo; apurinic endonuclease Nfo (EC:3.1.21.2) Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
apurinic endonuclease Apn1 (EC:3.1.21.2)
Probable endonuclease 4 id=4141687 bin=GWC2_Ignavibacteria_56_12 species=uncultured bacterium W5-47b genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
13_2_20cm_2_scaffold_1839_17
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(14174..14839)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D235_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY19275.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_2_20cm_2_scaffold_1839_18
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(15132..16427)
DNA (1296bp) protein (432aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D235_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY19275.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
13_2_20cm_2_scaffold_1839_19
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

16612..16932
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744915
hypothetical protein; K08976 putative membrane protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
hypothetical protein
13_2_20cm_2_scaffold_1839_20
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

17009..17464
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZC8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20819.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_2_20cm_2_scaffold_1839_21
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

17601..18443
DNA (843bp) protein (281aa)
Peptidoglycan-binding LysM n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CW40_9BACT
Peptidoglycan-binding LysM {ECO:0000313|EMBL:EDY21632.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_2_20cm_2_scaffold_1839_22
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

18535..19521
DNA (987bp) protein (329aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CW39_9BACT rbh
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=
acetyl-CoA carboxylase, carboxyl transferase subunit alpha
13_2_20cm_2_scaffold_1839_23
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

19527..20111
DNA (585bp) protein (195aa)
Uncharacterized protein id=14627958 bin=bin7_NC10_sister species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin7_NC10_sister organism_group=NC10
Uncharacterized protein Tax=CSP1_6_Rokubacteria
13_2_20cm_2_scaffold_1839_24
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

20235..21041
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAG2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY16623.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_2_20cm_2_scaffold_1839_25
unknown

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comp(21052..21222)
DNA (171bp) protein (57aa)

This feature has no annotations

13_2_20cm_2_scaffold_1839_26
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(21305..22219)
DNA (915bp) protein (305aa)
Esterase n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NNY1_GRAMM
Putative alpha-dextrin endo-1, 6-alpha-glucosidase {ECO:0000313|EMBL:KFE72130.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae;
esterase
Displaying 27 items

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