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13_2_20cm_2_scaffold_117

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Displaying 30 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_117_1
unknown

Not on your lists

comp(498..752)
DNA (255bp) protein (85aa)

This feature has no annotations

13_2_20cm_2_scaffold_117_2

Not on your lists

1357..1776
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8UZG0_TERSS
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49185.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
13_2_20cm_2_scaffold_117_3
unknown

Not on your lists

2604..3032
DNA (429bp) protein (143aa)

This feature has no annotations

13_2_20cm_2_scaffold_117_4
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

3076..4644
DNA (1569bp) protein (523aa)
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
13_2_20cm_2_scaffold_117_5
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(4655..4963)
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7NYG9_HALMD
rps10p; 30S ribosomal protein S10P; K02946 small subunit ribosomal protein S10 Tax=RBG_16_Archaea_50_20_curated
rps10p; 30S ribosomal protein S10P
13_2_20cm_2_scaffold_117_6
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(5166..6479)
DNA (1314bp) protein (438aa)
Elongation factor 1-alpha n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICE8_NITGG
tuf; elongation factor 1-alpha Tax=RBG_16_Archaea_50_20_curated
tuf; elongation factor 1-alpha
13_2_20cm_2_scaffold_117_7
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

6658..7950
DNA (1293bp) protein (431aa)
gdhA; glutamate dehydrogenase (EC:1.4.1.3) Tax=RBG_16_Thaumarchaeota_49_8_curated
gdhA; glutamate dehydrogenase (EC:1.4.1.3)
Glu/Leu/Phe/Val dehydrogenase, C terminal n=1 Tax=uncultured organism RepID=M1Q2T1_9ZZZZ
13_2_20cm_2_scaffold_117_8
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(7969..8397)
DNA (429bp) protein (143aa)
ferritin; K03594 bacterioferritin id=14424664 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
ferritin; K03594 bacterioferritin Tax=CSP1_2_Dadabacteria
ferritin
13_2_20cm_2_scaffold_117_9
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

8596..9393
DNA (798bp) protein (266aa)
putative (S)-2,3-Di-O-farnesylgeranylglyceryl synthase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-] Tax=RBG_16_Archaea_50_20_curated
hypothetical protein n=2 Tax=unclassified candidate division pSL4 RepID=UPI000382AB40
4-hydroxybenzoate polyprenyltransferase
13_2_20cm_2_scaffold_117_10
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(9334..10653)
DNA (1320bp) protein (440aa)
hmgA-1; hydroxymethylglutaryl-CoA reductase, degradative (EC:1.1.1.34 1.1.1.88); K00054 hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88] Tax=RBG_13_Bathyarchaeota_38_9_curated
hmgA-1; hydroxymethylglutaryl-CoA reductase, degradative (EC:1.1.1.34 1.1.1.88)
3-hydroxy-3-methylglutaryl-coenzyme A reductase n=1 Tax=uncultured archaeon RepID=D1JD30_9ARCH
13_2_20cm_2_scaffold_117_11
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(10708..11736)
DNA (1029bp) protein (343aa)
mevalonate kinase (EC:2.7.1.36)
Mevalonate kinase n=1 Tax=Thermofilum pendens (strain Hrk 5) RepID=A1RYL2_THEPD
hypothetical protein Tax=RBG_13_Bathyarchaeota_38_9_curated
13_2_20cm_2_scaffold_117_12
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(11711..12559)
DNA (849bp) protein (283aa)
MEMO1 family protein Mfer_0894 n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZG0_METFV
dioxygenase; K06990 Tax=RBG_13_Bathyarchaeota_46_16b_curated
hypothetical protein
13_2_20cm_2_scaffold_117_13
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(12556..13230)
DNA (675bp) protein (225aa)
30S ribosomal protein S2 n=4 Tax=Methanobrevibacter RepID=RS2_METS3
rps2P; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RBG_16_Archaea_50_20_curated
rps2P; 30S ribosomal protein S2
13_2_20cm_2_scaffold_117_14
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(13241..13465)
DNA (225bp) protein (75aa)
DNA-directed RNA polymerase subunit N n=1 Tax=Acidianus hospitalis (strain W1) RepID=F4B761_ACIHW
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
RNA polymerase subunit N
13_2_20cm_2_scaffold_117_15
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(13476..13886)
DNA (411bp) protein (137aa)
30S ribosomal protein S9 n=1 Tax=Staphylothermus hellenicus (strain DSM 12710 / JCM 10830 / BK20S6-10-b1 / P8) RepID=D7DAD8_STAHD
rps9p; ribosomal protein S9P Rps9p; K02996 small subunit ribosomal protein S9 Tax=RBG_16_Archaea_50_20_curated
30S ribosomal protein S9
13_2_20cm_2_scaffold_117_16
Thermococcus onnurineus, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists


comp(13879..14340)
DNA (462bp) protein (154aa)
50S ribosomal protein L13 n=1 Tax=Thermococcus onnurineus (strain NA1) RepID=B6YSQ5_THEON
rpl13p; 50S ribosomal protein L13
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366}; TaxID=523850 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus onnurineus
13_2_20cm_2_scaffold_117_17
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(14337..14972)
DNA (636bp) protein (212aa)
rpoD; DNA-directed RNA polymerase subunit D; K03047 DNA-directed RNA polymerase subunit D [EC:2.7.7.6] Tax=RBG_16_Archaea_50_20_curated
RNA polymerase insert n=1 Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BB81_9ARCH
RNA polymerase insert
13_2_20cm_2_scaffold_117_18
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

14999..15325
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) RepID=G0EHR4_PYRF1
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_2_20cm_2_scaffold_117_19
unknown

Not on your lists

comp(15629..16171)
DNA (543bp) protein (181aa)

This feature has no annotations

13_2_20cm_2_scaffold_117_20
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(16219..16908)
DNA (690bp) protein (230aa)
30S ribosomal protein S4 n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HJ21_PYRSN
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RBG_16_Archaea_50_20_curated
30S ribosomal protein S4
13_2_20cm_2_scaffold_117_21
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(16917..17525)
DNA (609bp) protein (203aa)
30S ribosomal protein S13 n=1 Tax=Thermogladius cellulolyticus (strain 1633) RepID=I3TDW4_THEC1
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RBG_16_Archaea_50_20_curated
30S ribosomal protein S13
13_2_20cm_2_scaffold_117_22
CG_Micra_05, Micraarchaeota, Archaea

Not on your lists

17583..18182
DNA (600bp) protein (200aa)
S-adenosylmethionine decarboxylase proenzyme; K01611 S-adenosylmethionine decarboxylase [EC:4.1.1.50] Tax=CG_Micra_05
S-adenosylmethionine decarboxylase proenzyme (AdoMetDC)(SamDC) n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YF21_DICT6
S-adenosylmethionine decarboxylase
13_2_20cm_2_scaffold_117_23
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

19162..20010
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI00035E799E
Peptidase family M50/AN1-like Zinc finger
Peptidase family M50/AN1-like Zinc finger {ECO:0000313|EMBL:AIF82922.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" sourc
13_2_20cm_2_scaffold_117_24
Methanopyrus kandleri, Methanopyrus, Methanopyrales, Methanopyri, Euryarchaeota, Archaea

Not on your lists

comp(20171..20956)
DNA (786bp) protein (262aa)
Probable tRNA pseudouridine synthase B {ECO:0000255|HAMAP-Rule:MF_01081}; EC=5.4.99.25 {ECO:0000255|HAMAP-Rule:MF_01081};; tRNA pseudouridine(55) synthase {ECO:0000255|HAMAP-Rule:MF_01081}; Short=Psi5
Probable tRNA pseudouridine synthase B n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=TRUB_METKA
TruB; H/ACA RNA-protein complex component Cbf5p
13_2_20cm_2_scaffold_117_25
RBG_16_Archaea_50_20_curated, Archaea

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comp(21308..21604)
DNA (297bp) protein (99aa)
50S ribosomal protein L14e n=1 Tax=Thermosphaera aggregans (strain DSM 11486 / M11TL) RepID=D5U1Z7_THEAM
50S ribosomal protein L14e; K02875 large subunit ribosomal protein L14e Tax=RBG_16_Archaea_50_20_curated
50S ribosomal protein L14
13_2_20cm_2_scaffold_117_26
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(21650..22270)
DNA (621bp) protein (207aa)
cytidylate kinase (EC:2.7.4.14); K00945 cytidylate kinase [EC:2.7.4.14] Tax=RBG_13_Bathyarchaeota_38_9_curated
cmk; cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase n=1 Tax=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) RepID=KCY_AERPE
13_2_20cm_2_scaffold_117_27
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(22476..22967)
DNA (492bp) protein (164aa)
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
13_2_20cm_2_scaffold_117_28
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(23062..23655)
DNA (594bp) protein (198aa)
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3] Tax=RBG_16_Archaea_50_20_curated
adkA; adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Aeropyrum camini SY1 = JCM 12091 RepID=U3T9E3_9CREN
13_2_20cm_2_scaffold_117_29
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(23655..25022)
DNA (1368bp) protein (456aa)
Protein translocase subunit SecY n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7U2G8_9ARCH
hypothetical protein; K10956 protein transport protein SEC61 subunit alpha Tax=RBG_16_Archaea_50_20_curated
preprotein translocase subunit SecY
13_2_20cm_2_scaffold_117_30
Hyperthermus butylicus, Hyperthermus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists


comp(25158..25322)
DNA (165bp) protein (55aa)
50S ribosomal protein L15 {ECO:0000255|HAMAP-Rule:MF_01341}; TaxID=415426 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Pyrodictiaceae; Hyperthermus.;" source="Hyperthermus butylic
Displaying 30 items

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