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berkeley_reactor_200306_biofilm_scaffold_8117

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Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_8117_1
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1233
DNA (1233bp) protein (411aa)
Amino acid adenylation domain protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QVC3_METTR
amino acid adenylation domain-containing protein
Amino acid adenylation domain protein {ECO:0000313|EMBL:ACB23345.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
berkeley_reactor_200306_biofilm_scaffold_8117_2
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1574..2206
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F41BAF
DnaJ-class molecular chaperone with C-terminal Zn finger domain {ECO:0000313|EMBL:EIM25167.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
heat shock protein DnaJ domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_8117_3
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2294..3286
DNA (993bp) protein (331aa)
cobS; cobaltochelatase CobS (EC:6.6.1.2)
aerobic cobaltochelatase subunit CobS n=1 Tax=Methylobacterium sp. MB200 RepID=UPI0003477ED3
Cobaltochelatase, CobS subunit {ECO:0000313|EMBL:EIM25166.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
berkeley_reactor_200306_biofilm_scaffold_8117_4
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3416..5296
DNA (1881bp) protein (627aa)
cobalt chelatase large subunit (EC:6.6.1.2)
Cobaltochelatase, CobT subunit n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMH3_9RHIZ
Cobaltochelatase, CobT subunit {ECO:0000313|EMBL:EIM25165.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
berkeley_reactor_200306_biofilm_scaffold_8117_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5646..8183
DNA (2538bp) protein (846aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21CW2_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD85774.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
berkeley_reactor_200306_biofilm_scaffold_8117_6
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8301..9062
DNA (762bp) protein (254aa)
Uncharacterized protein family UPF0005, putative n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QTM1_9RHOB
Uncharacterized protein family UPF0005, putative {ECO:0000313|EMBL:EEE45381.1}; TaxID=244592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11); (Stappia alexandrii).;"
inhibitor of apoptosis-promoting Bax1-related protein
berkeley_reactor_200306_biofilm_scaffold_8117_7
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9124..9654
DNA (531bp) protein (177aa)
GCN5-related N-acetyltransferase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21CW0_RHOPB
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ47093.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
GCN5-like N-acetyltransferase
berkeley_reactor_200306_biofilm_scaffold_8117_8
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9659..11272)
DNA (1614bp) protein (538aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D4AE00
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ACA16660.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_8117_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11284..11943)
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00035E0D26
SCP-like extracellular protein {ECO:0000313|EMBL:KFC73976.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_8117_10
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12105..14534)
DNA (2430bp) protein (810aa)
Conserved hypothetical transmembrane protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IMH1_AZOC5
transmembrane protein
Conserved hypothetical transmembrane protein {ECO:0000313|EMBL:BAF86549.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_8117_11
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14754..15701)
DNA (948bp) protein (316aa)
Putative permease n=1 Tax=Microvirga sp. WSM3557 RepID=I4YTH7_9RHIZ
Putative permease {ECO:0000313|EMBL:EIM27269.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_8117_12
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15850..16998
DNA (1149bp) protein (383aa)
Multi-sensor hybrid histidine kinase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TV86_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ34340.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
berkeley_reactor_200306_biofilm_scaffold_8117_13
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17026..17925)
DNA (900bp) protein (300aa)
Transcriptional regulator n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HQZ6_AZOC5
lysR; transcriptional regulator
Tax=RBG_16_Alphaproteobacteria_64_48_curated
berkeley_reactor_200306_biofilm_scaffold_8117_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18379..18843)
DNA (465bp) protein (155aa)
MgtC/SapB transporter n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3HYX9_RHOVT
MgtC/SapB transporter {ECO:0000313|EMBL:KFC67080.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
MgtC/SapB transporter
berkeley_reactor_200306_biofilm_scaffold_8117_15
Methylocapsa acidiphila, Methylocapsa, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19001..22462
DNA (3462bp) protein (1154aa)
Pyruvate carboxylase {ECO:0000256|PIRNR:PIRNR001594}; EC=6.4.1.1 {ECO:0000256|PIRNR:PIRNR001594};; TaxID=133552 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocapsa.;" source="Methylocapsa acidiphila.;"
pyruvate carboxylase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031D7C4E
pyruvate carboxylase
berkeley_reactor_200306_biofilm_scaffold_8117_16
bacterium YEK0313, Bacteria

Not on your lists

22608..23303
DNA (696bp) protein (232aa)
ATP-dependent transcriptional regulator n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QQT7_9BRAD
DNA-binding transcriptional regulator CsgD {ECO:0000313|EMBL:CEJ11718.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
LuxR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_8117_17
unknown

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23422..24288
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00037D7BAC
berkeley_reactor_200306_biofilm_scaffold_8117_18
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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24431..26404
DNA (1974bp) protein (658aa)
Amine oxidase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZWZ9_9PROT
Amine oxidase {ECO:0000256|RuleBase:RU000672}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
maoI; tyramine oxidase
berkeley_reactor_200306_biofilm_scaffold_8117_19
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26449..27630
DNA (1182bp) protein (394aa)
Spermidine/putrescine-binding protein PotD n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0L4_STAND
spermidine/putrescine-binding protein; PotD
Spermidine/putrescine-binding protein PotD {ECO:0000313|EMBL:ADH91335.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_8117_20
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27743..28846
DNA (1104bp) protein (368aa)
ABC transporter, nucleotide binding/ATPase protein (Spermidine/putrescine) n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IWV8_POLGS
potA; Spermidine/putrescine ABC transporter permease/ATPase
ABC transporter, nucleotide binding/ATPase protein (Spermidine/putrescine) {ECO:0000313|EMBL:ADZ71535.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
berkeley_reactor_200306_biofilm_scaffold_8117_21
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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28868..29800
DNA (933bp) protein (311aa)
ABC-type spermidine/putrescine transport system, permease component I n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6B2P7_9BACT
ABC-type spermidine/putrescine transport system, permease component I {ECO:0000313|EMBL:EIQ01539.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
spermidine/putrescine ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_8117_22
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29804..30616
DNA (813bp) protein (271aa)
Spermidine/putrescine ABC transporter, permease component n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q3M2_9RHIZ
potC; spermidine/putrescine ABC transporter, permease component
Spermidine/putrescine ABC transporter, permease component {ECO:0000313|EMBL:CDI10623.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
berkeley_reactor_200306_biofilm_scaffold_8117_23
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30807..32783
DNA (1977bp) protein (659aa)
Amine oxidase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZWZ9_9PROT
Amine oxidase {ECO:0000256|RuleBase:RU000672}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
tyramine oxidase
berkeley_reactor_200306_biofilm_scaffold_8117_24
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32899..33321
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T590_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE01617.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
histidine triad (HIT) protein
berkeley_reactor_200306_biofilm_scaffold_8117_25
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33374..34336
DNA (963bp) protein (321aa)
NUDIX hydrolase n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Z0Z3_9RHOO
NUDIX hydrolase {ECO:0000313|EMBL:ENO88073.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
NADH pyrophosphatase zinc ribbon domain protein
berkeley_reactor_200306_biofilm_scaffold_8117_26
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(34339..35541)
DNA (1203bp) protein (401aa)
N-isopropylammelide isopropylaminohydrolase (EC:3.5.99.4)
N-isopropylammelide isopropylaminohydrolase {ECO:0000313|EMBL:ADB48780.1}; EC=3.5.99.4 {ECO:0000313|EMBL:ADB48780.1};; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037C818F
berkeley_reactor_200306_biofilm_scaffold_8117_27
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35538..38054)
DNA (2517bp) protein (839aa)
Oxidoreductase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JM85_AGRRK
oxidoreductase
Oxidoreductase {ECO:0000313|EMBL:KEA04554.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
berkeley_reactor_200306_biofilm_scaffold_8117_28
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38317..39633
DNA (1317bp) protein (439aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000374F158
putative sugar ABC transporter, substrate-binding protein
Putative sugar ABC transporter, substrate-binding protein {ECO:0000313|EMBL:AGB75385.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
berkeley_reactor_200306_biofilm_scaffold_8117_29
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39636..40619
DNA (984bp) protein (328aa)
ABC transporter permease n=1 Tax=Rhizobium leguminosarum RepID=UPI00037DBEDA
permease component of ABC-type sugar transporter
Permease component of ABC-type sugar transporter {ECO:0000313|EMBL:CDM61773.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
berkeley_reactor_200306_biofilm_scaffold_8117_30
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40616..41455
DNA (840bp) protein (280aa)
sugar ABC transporter n=1 Tax=Kaistia granuli RepID=UPI00035C4BB7
sugar ABC transporter
Sugar ABC transporter {ECO:0000313|EMBL:CDM61772.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
Displaying items 1-30 of 33 in total

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