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berkeley_reactor_200306_biofilm_scaffold_83611

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Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_83611_1
unknown

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2..127
DNA (126bp) protein (42aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_83611_2
bacterium YEK0313, Bacteria

Not on your lists

comp(161..796)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0D3_STAND
Uncharacterized protein {ECO:0000313|EMBL:CEJ13908.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_83611_3
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(799..2616)
DNA (1818bp) protein (606aa)
ABC transporter, substrate binding protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NPL8_9RHOB
ABC transporter, substrate binding protein {ECO:0000313|EMBL:EAV45381.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
mammalian cell entry related domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_83611_4
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2620..3411)
DNA (792bp) protein (264aa)
iron ABC transporter ATP-binding protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E499EB
ABC-type transport system involved in resistance to organic solvents, ATPase component {ECO:0000313|EMBL:EIM28213.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
ABC transporter ATP-binding protein
berkeley_reactor_200306_biofilm_scaffold_83611_5
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3411..4547)
DNA (1137bp) protein (379aa)
Putative integral membrane protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YW70_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:KFG68958.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_83611_6
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4666..5673
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UPE2_METS4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA18883.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_83611_7
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5784..7487
DNA (1704bp) protein (568aa)
hypothetical protein n=1 Tax=Phaeobacter gallaeciensis RepID=UPI00037B7470
caspase-1, p20
Rhodobacter sphaeroides 2.4.1 plasmid C, complete sequence {ECO:0000313|EMBL:ABA81547.1}; TaxID=272943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM; 158).;"
berkeley_reactor_200306_biofilm_scaffold_83611_8
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7521..8411)
DNA (891bp) protein (297aa)
Putative transcriptional regulator, AraC family n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AF38_AZOBR
putative transcriptional regulator, AraC family
Transcriptional regulator {ECO:0000313|EMBL:AIB10510.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
berkeley_reactor_200306_biofilm_scaffold_83611_9
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8577..9608
DNA (1032bp) protein (344aa)
Ferredoxin--NADP reductase {ECO:0000256|HAMAP-Rule:MF_01685}; Short=FNR {ECO:0000256|HAMAP-Rule:MF_01685};; Short=Fd-NADP(+) reductase {ECO:0000256|HAMAP-Rule:MF_01685};; EC=1.18.1.2 {ECO:0000256|HAMAP-Rule:MF_01685};; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase (EC:1.8.1.9)
ferredoxin--NADP reductase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00035F86C1
berkeley_reactor_200306_biofilm_scaffold_83611_10
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9613..10479)
DNA (867bp) protein (289aa)
Transcription regulator n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HV25_9RHIZ
HTH-type transcriptional regulator kipR Kip operon repressor protein
HTH-type transcriptional regulator kipR Kip operon repressor protein {ECO:0000313|EMBL:CDM61332.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
berkeley_reactor_200306_biofilm_scaffold_83611_11
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10482..11843)
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF122 RepID=J2IKS5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJL56600.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
Irg1; Immune-responsive gene 1 protein
berkeley_reactor_200306_biofilm_scaffold_83611_12
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12017..12328
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. H160 RepID=B5WBU0_9BURK
2Fe-2S iron-sulfur cluster binding domain protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
berkeley_reactor_200306_biofilm_scaffold_83611_13
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12315..13697
DNA (1383bp) protein (461aa)
BFD-like (2Fe-2S)-binding protein n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7SZM0_ALCXX
pyridine nucleotide-disulphide oxidoreductase family protein
Pyridine nucleotide-disulphide oxidoreductase family protein {ECO:0000313|EMBL:CDM61329.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
berkeley_reactor_200306_biofilm_scaffold_83611_14
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13694..14887
DNA (1194bp) protein (398aa)
sarcosine oxidase, subunit beta (EC:1.5.3.1)
Sarcosine oxidase, subunit beta {ECO:0000313|EMBL:CDM61328.1}; EC=1.5.3.1 {ECO:0000313|EMBL:CDM61328.1};; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
Glycine/D-amino acid oxidase, deaminating n=1 Tax=Rhizobium sp. CF122 RepID=J2J6E1_9RHIZ
berkeley_reactor_200306_biofilm_scaffold_83611_15
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14889..15773
DNA (885bp) protein (295aa)
polar amino acid transport system substrate-binding protein (EC:4.2.1.51)
Periplasmic component of amino acid ABC-type transporter/signal transduction system n=1 Tax=Rhizobium sp. CF122 RepID=J3BSC6_9RHIZ
Periplasmic component of amino acid ABC-type transporter/signal transduction system {ECO:0000313|EMBL:EJL56604.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
berkeley_reactor_200306_biofilm_scaffold_83611_16
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15854..16642
DNA (789bp) protein (263aa)
ABC transporter n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HG40_9RHIZ
ABC transporter {ECO:0000313|EMBL:EPE97030.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
ABC transporter-like protein
berkeley_reactor_200306_biofilm_scaffold_83611_17
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16639..17286
DNA (648bp) protein (216aa)
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Rhizobium sp. CF122 RepID=J3BRD6_9RHIZ
Inner membrane amino-acid ABC transporter permease protein yecS
Inner membrane amino-acid ABC transporter permease protein yecS {ECO:0000313|EMBL:CDM61325.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
berkeley_reactor_200306_biofilm_scaffold_83611_18
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17288..18025
DNA (738bp) protein (246aa)
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Rhizobium sp. CF142 RepID=J1SLX0_9RHIZ
putative amino-acid ABC transporter permease protein yckA
Putative amino-acid ABC transporter permease protein yckA {ECO:0000313|EMBL:CDM61324.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
berkeley_reactor_200306_biofilm_scaffold_83611_19
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18065..19132
DNA (1068bp) protein (356aa)
Putative choloylglycine hydrolase n=1 Tax=Rhizobium sp. CF122 RepID=J3BRE7_9RHIZ
Putative choloylglycine hydrolase {ECO:0000313|EMBL:EJL56636.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
acyl-CoA-6-aminopenicillanic acid acyltransferase
berkeley_reactor_200306_biofilm_scaffold_83611_20
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19270..20127
DNA (858bp) protein (286aa)
Dienelactone hydrolase-like enzyme n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z020_9RHIZ
Dienelactone hydrolase-like enzyme {ECO:0000313|EMBL:EIM29562.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
Dienelactone hydrolase family protein
berkeley_reactor_200306_biofilm_scaffold_83611_21
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20287..20793
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E57001
Universal stress protein {ECO:0000256|PIRNR:PIRNR006276}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
putative universal stress protein
berkeley_reactor_200306_biofilm_scaffold_83611_22
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20797..22137)
DNA (1341bp) protein (447aa)
Uncharacterized protein {ECO:0000313|EMBL:GAN50953.1}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
berkeley_reactor_200306_biofilm_scaffold_83611_23
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22298..23593)
DNA (1296bp) protein (432aa)
Putative oxidoreductase protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J417_POLGS
oxidoreductase
Putative oxidoreductase protein {ECO:0000313|EMBL:ADZ69943.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
berkeley_reactor_200306_biofilm_scaffold_83611_24
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23800..24891
DNA (1092bp) protein (364aa)
Acyltransferase 3 n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QK54_METTR
Acyltransferase {ECO:0000313|EMBL:EWY39417.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
acyltransferase 3
berkeley_reactor_200306_biofilm_scaffold_83611_25
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24888..25712
DNA (825bp) protein (275aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00036627F7
glycoside hydrolase
Glycoside hydrolase {ECO:0000313|EMBL:AIT08232.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
berkeley_reactor_200306_biofilm_scaffold_83611_26
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25801..26994
DNA (1194bp) protein (398aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YBW6_9BRAD
Putative uncharacterized protein {ECO:0000313|EMBL:EHR00398.1}; Flags: Precursor;; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
peptidase C14 caspase catalytic subunit p20
berkeley_reactor_200306_biofilm_scaffold_83611_27
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26991..27752
DNA (762bp) protein (254aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YBW7_9BRAD
Putative uncharacterized protein {ECO:0000313|EMBL:EHR00399.1}; Flags: Precursor;; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_83611_28
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27765..28274
DNA (510bp) protein (170aa)
Putative phosphohistidine phosphatase, SixA (EC:3.1.3.-)
Phosphohistidine phosphatase SixA n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y2Z6_9RHIZ
Phosphohistidine phosphatase SixA {ECO:0000313|EMBL:EMS41276.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
berkeley_reactor_200306_biofilm_scaffold_83611_29
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28589..30052
DNA (1464bp) protein (488aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0SWB4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD98491.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_83611_30
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30063..31106
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A291_STAND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH89554.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Displaying items 1-30 of 36 in total

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