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berkeley_reactor_200306_biofilm_scaffold_28991

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Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_28991_1
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..509)
DNA (507bp) protein (169aa)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154501}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154502};; Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00719}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
Cobalamin synthase n=1 Tax=Methylobacterium sp. GXF4 RepID=I9WYR8_9RHIZ
cobalamin-5-phosphate synthase CobS
berkeley_reactor_200306_biofilm_scaffold_28991_2
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

624..1778
DNA (1155bp) protein (385aa)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013344}; Short=NN:DBI PRT {ECO:0000256|HAMAP-Rule:MF_00230};; EC=2.4.2.21 {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013328};; N(1)-alpha-phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003099B87
berkeley_reactor_200306_biofilm_scaffold_28991_3
unknown

Not on your lists

1855..2148
DNA (294bp) protein (98aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_28991_4
Aspergillus oryzae, Aspergillus, Eurotiales, Eurotiomycetidae, Ascomycota, Fungi

Not on your lists

comp(2197..3126)
DNA (930bp) protein (310aa)
Quinone reductase n=1 Tax=Aspergillus oryzae (strain 3.042) RepID=I8IV92_ASPO3
Quinone reductase {ECO:0000313|EMBL:EIT83401.1}; TaxID=1160506 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus.;" source="Aspergillus oryzae (strain 3.042) (Yellow koji mold).;"
alcohol dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_28991_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3207..4730)
DNA (1524bp) protein (508aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
ATPase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034C4AC0
sensor signal transduction histidine kinase
berkeley_reactor_200306_biofilm_scaffold_28991_6
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4828..5343
DNA (516bp) protein (172aa)
Putative succinoglycan biosynthesis protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U9Q0_9RHIZ
Putative succinoglycan biosynthesis protein {ECO:0000313|EMBL:ENN89284.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
exoI; succinoglycan biosynthesis protein
berkeley_reactor_200306_biofilm_scaffold_28991_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5538..6392
DNA (855bp) protein (285aa)
Putative uncharacterized protein id=5015987 bin=GWA2_Methylomirabilis_73_35 species=Halalkalicoccus jeotgali genus=Halalkalicoccus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
beta-lactamase domain-containing protein
Tax=GWA2_Rokubacteria_73_35_curated
berkeley_reactor_200306_biofilm_scaffold_28991_8
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6799..7548)
DNA (750bp) protein (250aa)
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase n=3 Tax=Rhizobium meliloti RepID=F6EC49_SINMK
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:CDX40515.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
berkeley_reactor_200306_biofilm_scaffold_28991_9
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7550..8278)
DNA (729bp) protein (243aa)
ABC transporter related n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6ULJ8_SINMW
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ABR64528.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
berkeley_reactor_200306_biofilm_scaffold_28991_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8280..9329)
DNA (1050bp) protein (350aa)
Ribose transport system permease protein RbsC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CV29_9RHIZ
Ribose transport system permease protein RbsC {ECO:0000313|EMBL:EYR78065.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter
berkeley_reactor_200306_biofilm_scaffold_28991_11
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9326..10300)
DNA (975bp) protein (325aa)
Mll7376 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q986F9_RHILO
hypothetical protein
Mll7376 protein {ECO:0000313|EMBL:BAB53494.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
berkeley_reactor_200306_biofilm_scaffold_28991_12
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10354..11547)
DNA (1194bp) protein (398aa)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F4R7_9RHIZ
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:EHS52288.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
mandelate racemase / muconate lactonizing enzyme family protein
berkeley_reactor_200306_biofilm_scaffold_28991_13
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11558..12277)
DNA (720bp) protein (240aa)
GntR domain protein n=1 Tax=Sinorhizobium meliloti (strain BL225C) RepID=F6BX02_SINMB
Transcriptional regulator,GntR family
Transcriptional regulator, GntR family {ECO:0000313|EMBL:AAK64688.2}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
berkeley_reactor_200306_biofilm_scaffold_28991_14
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12363..13361)
DNA (999bp) protein (333aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
tRNA-dihydrouridine synthase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YNA4_9RHIZ
tRNA-dihydrouridine synthase A
berkeley_reactor_200306_biofilm_scaffold_28991_15
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13600..14124
DNA (525bp) protein (175aa)
Integrase family protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YBP1_MESOW
integrase family protein
Integrase family protein {ECO:0000313|EMBL:AEH88865.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
berkeley_reactor_200306_biofilm_scaffold_28991_16
Mesorhizobium sp. L2C089B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13965..14333)
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI00036F241A
endoribonuclease L-PSP
Uncharacterized protein {ECO:0000313|EMBL:ESZ02173.1}; TaxID=1287120 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C089B000.;"
berkeley_reactor_200306_biofilm_scaffold_28991_17
Roseovarius sp. 217, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14491..16446)
DNA (1956bp) protein (652aa)
ABC transporter ATP-binding protein (EC:3.6.3.-)
ABC transporter ATP-binding protein n=1 Tax=Roseovarius sp. 217 RepID=A3W7A5_9RHOB
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EAQ23476.1}; TaxID=314264 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. 217.;"
berkeley_reactor_200306_biofilm_scaffold_28991_18
Leisingera sp. ANG-Vp, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16418..17245)
DNA (828bp) protein (276aa)
Hypothetical ABC transporter permease n=1 Tax=Moritella sp. PE36 RepID=A6F9U3_9GAMM
Peptide ABC transporter permease {ECO:0000313|EMBL:KIC16270.1}; TaxID=1577896 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. ANG-Vp.;"
ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_28991_19
Chelonobacter oris, Chelonobacter, Pasteurellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17260..18243)
DNA (984bp) protein (328aa)
ABC transporter permease n=1 Tax=Marinobacterium stanieri RepID=UPI00025592DF
ABC transporter permease {ECO:0000313|EMBL:KGQ70286.1}; TaxID=505317 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Chelonobacter.;" source="Chelonobacter oris.;"
peptide ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_28991_20
Leisingera sp. ANG-Vp, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18403..19911)
DNA (1509bp) protein (503aa)
peptide ABC transporter substrate-binding protein n=1 Tax=Marinobacterium stanieri RepID=UPI00025592DE
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIC16272.1}; TaxID=1577896 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. ANG-Vp.;"
ABC transporter periplasmic solute-binding protein
berkeley_reactor_200306_biofilm_scaffold_28991_21
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19967..20914)
DNA (948bp) protein (316aa)
TauD/TfdA family dioxygenase (EC:1.14.11.17)
hypothetical protein n=2 Tax=Rhizobium meliloti RepID=UPI000313847A
Uncharacterized protein {ECO:0000313|EMBL:KDP87425.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
berkeley_reactor_200306_biofilm_scaffold_28991_22
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21303..22037
DNA (735bp) protein (245aa)
Transcriptional regulator, GntR family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A6U7_STAND
GntR family transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:KJS33995.1}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
berkeley_reactor_200306_biofilm_scaffold_28991_23
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22082..23251)
DNA (1170bp) protein (390aa)
phosphonate metabolism protein PhnM n=1 Tax=Rhizobium meliloti RepID=UPI000368731B
Phosphonate metabolism protein PhnM {ECO:0000313|EMBL:KGM34507.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
phosphonate metabolism protein PhnM
berkeley_reactor_200306_biofilm_scaffold_28991_24
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23257..24195)
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00037A0EAE
Carbon-phosphorus lyase {ECO:0000313|EMBL:KGM34510.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
carbon-phosphorus lyase complex subunit PhnJ
berkeley_reactor_200306_biofilm_scaffold_28991_25
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24192..25295)
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XXF4_RHIRD
Carbon-phosphorus lyase complex subunit PhnI {ECO:0000313|EMBL:KJF75375.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
putative PhnI protein, phosphonate metabolism
berkeley_reactor_200306_biofilm_scaffold_28991_26
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25299..25901)
DNA (603bp) protein (201aa)
phosphonate metabolism protein PhnH n=1 Tax=Rhizobium mongolense RepID=UPI0003B54AAC
PhnH protein
Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence {ECO:0000313|EMBL:AJG23110.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
berkeley_reactor_200306_biofilm_scaffold_28991_27
Roseobacter sp. AzwK-3b, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25901..26356)
DNA (456bp) protein (152aa)
DNA repair protein RecO n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FMU9_9RHOB
DNA repair protein RecO {ECO:0000313|EMBL:EDM72435.1}; TaxID=351016 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. AzwK-3b.;"
phnG; alkylphosphonate utilization protein PhnG
berkeley_reactor_200306_biofilm_scaffold_28991_28
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26758..27837
DNA (1080bp) protein (360aa)
hypothetical protein n=1 Tax=Herbaspirillum lusitanum RepID=UPI000309AF5C
Uncharacterized protein {ECO:0000313|EMBL:KGM34166.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
FAD dependent oxidoreductase
berkeley_reactor_200306_biofilm_scaffold_28991_29
Streptomyces sp. PVA 94-07, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27870..28856)
DNA (987bp) protein (329aa)
Integral membrane protein n=2 Tax=Streptomyces RepID=V4I9R4_9ACTO
Integral membrane protein {ECO:0000313|EMBL:ESQ06557.1}; TaxID=1223307 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. PVA 94-07.;"
integral membrane protein
berkeley_reactor_200306_biofilm_scaffold_28991_30
Calothrix sp. PCC 7507, Calothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(28929..29717)
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Nodosilinea nodulosa RepID=UPI0002EB6242
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:AFY31043.1}; TaxID=99598 species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Calothrix.;" source="Calothrix sp. PCC 7507.;"
Displaying items 1-30 of 50 in total

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