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berkeley_reactor_200306_biofilm_scaffold_70490

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_70490_1
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..326)
DNA (324bp) protein (108aa)
Probable acetoacetate decarboxylase {ECO:0000256|HAMAP-Rule:MF_00597}; Short=AAD {ECO:0000256|HAMAP-Rule:MF_00597};; Short=ADC {ECO:0000256|HAMAP-Rule:MF_00597};; EC=4.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00597};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
Probable acetoacetate decarboxylase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FGH0_9RHIZ
acetoacetate decarboxylase
berkeley_reactor_200306_biofilm_scaffold_70490_2
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

631..1776
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=Sinorhizobium meliloti (strain SM11) RepID=F7XJA1_SINMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH83108.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
berkeley_reactor_200306_biofilm_scaffold_70490_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1822..2943)
DNA (1122bp) protein (374aa)
Putative alpha/beta hydrolase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z2Z4_AZOL4
Dienelactone hydrolase {ECO:0000313|EMBL:KFC64106.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
putative alpha/beta hydrolase
berkeley_reactor_200306_biofilm_scaffold_70490_4
Mesorhizobium sp. L2C054A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3152..3811)
DNA (660bp) protein (220aa)
UPI0003D0398F related cluster n=1 Tax=unknown RepID=UPI0003D0398F
Glutathione S-transferase {ECO:0000313|EMBL:ESZ32614.1}; TaxID=1287100 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C054A000.;"
Glutathione S-transferase domain protein
berkeley_reactor_200306_biofilm_scaffold_70490_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3808..4638)
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0BZY9_RHILT
Uncharacterized protein {ECO:0000313|EMBL:EJC72165.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
vanillate O-demethylase oxygenase subunit
berkeley_reactor_200306_biofilm_scaffold_70490_6
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4650..5300)
DNA (651bp) protein (217aa)
oxidoreductase n=1 Tax=Rhizobium mongolense RepID=UPI0003B5B53F
Rieske (2Fe-2S) domain-containing protein
Rieske (2Fe-2S) domain-containing protein {ECO:0000313|EMBL:AJD44700.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
berkeley_reactor_200306_biofilm_scaffold_70490_7
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5456..5779)
DNA (324bp) protein (108aa)
acylphosphatase-like protein (EC:3.6.1.7)
Acylphosphatase-like protein {ECO:0000313|EMBL:AJD44701.1}; EC=3.6.1.7 {ECO:0000313|EMBL:AJD44701.1};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
acylphosphatase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI0003763A7D
berkeley_reactor_200306_biofilm_scaffold_70490_8
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5776..6336)
DNA (561bp) protein (187aa)
ATPase-like protein n=2 Tax=Burkholderia cenocepacia RepID=A0K9G5_BURCH
ATPase-like protein
ATPase-like protein {ECO:0000313|EMBL:ACA91558.1}; TaxID=406425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia (strain MC0-3).;"
berkeley_reactor_200306_biofilm_scaffold_70490_9
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6455..7438)
DNA (984bp) protein (328aa)
NAD-dependent epimerase/dehydratase family protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5S7B3_RHIET
NAD-dependent epimerase
NAD-dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:AGS23291.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
berkeley_reactor_200306_biofilm_scaffold_70490_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7520..8098)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036EC157
XRE family transcriptional regulator
XRE family transcriptional regulator {ECO:0000313|EMBL:AHF85546.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
berkeley_reactor_200306_biofilm_scaffold_70490_11
bacterium YEK0313, Bacteria

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comp(8095..8799)
DNA (705bp) protein (235aa)
Glutathione S-transferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YLA1_9RHIZ
Disulfide-bond oxidoreductase YfcG {ECO:0000313|EMBL:CEJ13926.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
glutathione S-transferase domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_70490_12
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8896..10860)
DNA (1965bp) protein (655aa)
Peptidase M23 n=1 Tax=Methylobacterium sp. GXF4 RepID=I9LGJ2_9RHIZ
Peptidase M23 {ECO:0000313|EMBL:EIZ83854.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
peptidase M23B
berkeley_reactor_200306_biofilm_scaffold_70490_13
unknown

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10907..11686
DNA (780bp) protein (260aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_70490_14
unknown

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11664..11966
DNA (303bp) protein (101aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_70490_15
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11994..12959)
DNA (966bp) protein (322aa)
Magnesium/cobalt transport protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GCP8_9BRAD
Magnesium transporter {ECO:0000313|EMBL:ETR76520.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
corA; magnesium/cobalt transport protein
berkeley_reactor_200306_biofilm_scaffold_70490_16
bacterium YEK0313, Bacteria

Not on your lists

13029..13652
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037CC6A1
Arginine exporter protein ArgO {ECO:0000313|EMBL:CEJ16059.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
lysE type translocator family protein
berkeley_reactor_200306_biofilm_scaffold_70490_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13696..13830
DNA (135bp) protein (45aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC69581.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
berkeley_reactor_200306_biofilm_scaffold_70490_18
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14220..14807
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030C79D0
Uncharacterized protein {ECO:0000313|EMBL:EIM26132.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
ErfK/YbiS/YcfS/YnhG family protein
berkeley_reactor_200306_biofilm_scaffold_70490_19
unknown

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comp(15088..15273)
DNA (186bp) protein (62aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_70490_20
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15406..16302)
DNA (897bp) protein (299aa)
Putative phosphohydrolase n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YEX6_9BRAD
Putative phosphohydrolase {ECO:0000313|EMBL:EHR00755.1}; Flags: Precursor;; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_70490_21
unknown

Not on your lists

comp(16474..16671)
DNA (198bp) protein (66aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_70490_22
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17007..17699
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2WGT8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJK81905.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
transporter
berkeley_reactor_200306_biofilm_scaffold_70490_23
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17716..18606)
DNA (891bp) protein (297aa)
RNA polymerase sigma-70 factor, sigma-70 family protein 2 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HW77_ACHXA
RNA polymerase sigma factor sigma-70 family protein
RNA polymerase sigma-70 factor, sigma-70 family protein 2 {ECO:0000313|EMBL:ADP17557.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
berkeley_reactor_200306_biofilm_scaffold_70490_24
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18618..19076)
DNA (459bp) protein (153aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Alkylhydroperoxidase AhpD core n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QID6_NITHX
alkylhydroperoxidase AhpD core
berkeley_reactor_200306_biofilm_scaffold_70490_25
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19270..19407)
DNA (138bp) protein (46aa)
UPI0003D02E38 related cluster n=1 Tax=unknown RepID=UPI0003D02E38
Sulfurtransferase {ECO:0000313|EMBL:KGM35824.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
alcohol dehydrogenase
Displaying 25 items

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