ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_158730

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_158730_1
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..839)
DNA (837bp) protein (279aa)
permease n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037864D1
Permease {ECO:0000313|EMBL:KJC51506.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_158730_2
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(836..1627)
DNA (792bp) protein (264aa)
ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89C64_BRADU
ABC transporter ATP-binding protein
Uncharacterized protein {ECO:0000313|EMBL:KGJ64217.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
berkeley_reactor_200306_biofilm_scaffold_158730_3
unknown

Not on your lists

comp(1822..2082)
DNA (261bp) protein (87aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_158730_4
unknown

Not on your lists

2745..3413
DNA (669bp) protein (223aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_158730_5
unknown

Not on your lists

comp(3337..3597)
DNA (261bp) protein (87aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_158730_6
GWB1_Spirochaetes_60_80_curated, Spirochaetes, Bacteria

Not on your lists

comp(4217..5293)
DNA (1077bp) protein (359aa)
Putative uncharacterized protein id=1312260 bin=GWE1_Spirochaete_60_18 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE1_Spirochaete_60_18 organism_group=Spirochaetes
hypothetical protein
Tax=GWB1_Spirochaetes_60_80_curated
berkeley_reactor_200306_biofilm_scaffold_158730_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5643..7892
DNA (2250bp) protein (750aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037BD86E
CRISPR-associated HD domain-containing protein
CRISPR-associated HD domain protein {ECO:0000313|EMBL:ADU44690.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
berkeley_reactor_200306_biofilm_scaffold_158730_8
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8145..8810
DNA (666bp) protein (222aa)
CRISPR-associated protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SDP2_9RHIZ
CRISPR-associated protein
CRISPR-associated protein {ECO:0000313|EMBL:AHB48175.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
berkeley_reactor_200306_biofilm_scaffold_158730_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8807..10564
DNA (1758bp) protein (586aa)
CRISPR-associated protein, Csd1 family n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VMU0_RHOPX
Csd1 family CRISPR-associated protein
CRISPR-associated protein, Csd1 family {ECO:0000313|EMBL:ADU44692.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
berkeley_reactor_200306_biofilm_scaffold_158730_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10561..11514
DNA (954bp) protein (318aa)
CRISPR-associated protein, Csd2 family n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VMU1_RHOPX
protein Csd2 family protein
CRISPR-associated protein, Csd2 family {ECO:0000313|EMBL:ADU44693.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
berkeley_reactor_200306_biofilm_scaffold_158730_11
bacterium YEK0313, Bacteria

Not on your lists

11528..12181
DNA (654bp) protein (218aa)
CRISPR-associated protein Cas4 n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VMU2_RHOPX
PD-(D/E)XK nuclease superfamily protein {ECO:0000313|EMBL:CEJ15578.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
CRISPR-associated protein Cas4
berkeley_reactor_200306_biofilm_scaffold_158730_12
bacterium YEK0313, Bacteria

Not on your lists

12178..13212
DNA (1035bp) protein (345aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
CRISPR-associated protein Cas1 n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035CFC17
CRISPR-associated protein Cas1
berkeley_reactor_200306_biofilm_scaffold_158730_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13247..13537
DNA (291bp) protein (97aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VMU4_RHOPX
CRISPR-associated protein Cas2
berkeley_reactor_200306_biofilm_scaffold_158730_14
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14627..15463
DNA (837bp) protein (279aa)
Transglutaminase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5S9Z9_9RHIZ
transglutaminase
Transglutaminase {ECO:0000313|EMBL:AHB47277.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
berkeley_reactor_200306_biofilm_scaffold_158730_15
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15465..17174)
DNA (1710bp) protein (570aa)
Signal transduction histidine kinase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZX3_STAND
signal transduction histidine kinase
Signal transduction histidine kinase {ECO:0000313|EMBL:ADH87387.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_158730_16
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17402..17656
DNA (255bp) protein (85aa)
Putative membrane protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VFW6_9RHIZ
Putative membrane protein {ECO:0000313|EMBL:EJN04882.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
transglycosylase-associated protein
berkeley_reactor_200306_biofilm_scaffold_158730_17
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17928..18416
DNA (489bp) protein (163aa)
NAD-dependent formate dehydrogenase gamma subunit n=2 Tax=Bradyrhizobiaceae RepID=F7QJW2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS31832.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
NADH dehydrogenase (ubiquinone) 24 kDa subunit
berkeley_reactor_200306_biofilm_scaffold_158730_18
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18413..19966
DNA (1554bp) protein (518aa)
formate dehydrogenase subunit beta n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037B87DC
nuoF; NADH dehydrogenase I subunit F
NADH dehydrogenase I chain F {ECO:0000313|EMBL:BAC48402.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
berkeley_reactor_200306_biofilm_scaffold_158730_19
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20172..23048
DNA (2877bp) protein (959aa)
NAD-dependent formate dehydrogenase alpha subunit n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QJW4_9BRAD
NAD-dependent formate dehydrogenase alpha subunit {ECO:0000313|EMBL:EGP08579.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
formate dehydrogenase, alpha subunit
berkeley_reactor_200306_biofilm_scaffold_158730_20
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23051..23869
DNA (819bp) protein (273aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000368B2C2
fdhD; formate dehydrogenase formation protein subunit FdhD
Tax=RBG_16_Alphaproteobacteria_64_48_curated
berkeley_reactor_200306_biofilm_scaffold_158730_21
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23859..24077
DNA (219bp) protein (73aa)
NAD-dependent formate dehydrogenase n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003724F43
putative formate dehydrogenase delta subunit
Putative formate dehydrogenase delta subunit {ECO:0000313|EMBL:BAL78062.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
berkeley_reactor_200306_biofilm_scaffold_158730_22
Burkholderia andropogonis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24423..26468)
DNA (2046bp) protein (682aa)
Transketolase {ECO:0000313|EMBL:KKB63741.1}; EC=2.2.1.1 {ECO:0000313|EMBL:KKB63741.1};; TaxID=28092 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia andropogonis.;"
tktA; transketolase TktA (EC:2.2.1.1)
transketolase n=1 Tax=Gluconacetobacter europaeus RepID=UPI000237DD35
berkeley_reactor_200306_biofilm_scaffold_158730_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26798..27025
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0U7M5_METS4
Uncharacterized protein {ECO:0000313|EMBL:KFC63629.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_158730_24
bacterium YEK0313, Bacteria

Not on your lists


27340..29037
DNA (1698bp) protein (566aa)
30S ribosomal protein S1 n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZ19_STAND
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
30S ribosomal protein S1
berkeley_reactor_200306_biofilm_scaffold_158730_25
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29110..30648)
DNA (1539bp) protein (513aa)
Multidrug transport protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J8F6_AGRRK
multidrug transport protein
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:EJK82853.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
berkeley_reactor_200306_biofilm_scaffold_158730_26
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30645..31106)
DNA (462bp) protein (154aa)
Transcriptional regulator, MarR family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LIM2_RHITR
transcriptional regulator, MarR family
Transcriptional regulator, MarR family {ECO:0000313|EMBL:AGB69944.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
berkeley_reactor_200306_biofilm_scaffold_158730_27
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31390..31896)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RDF4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESR24191.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
membrane protein
Displaying 27 items

View Taxonomy