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berkeley_reactor_200306_biofilm_scaffold_96262

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_96262_1
unknown

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comp(1..111)
DNA (111bp) protein (37aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_96262_2
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(111..1535)
DNA (1425bp) protein (475aa)
RND efflux system, outer membrane lipoprotein, NodT family n=1 Tax=Rhodovulum sp. PH10 RepID=J6UH55_9RHOB
RND efflux system, outer membrane lipoprotein, NodT family {ECO:0000313|EMBL:EJW13276.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
NodT family RND efflux system outer membrane lipoprotein
berkeley_reactor_200306_biofilm_scaffold_96262_3
unknown

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comp(1781..2569)
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Thiothrix disciformis RepID=UPI00037C46AD
berkeley_reactor_200306_biofilm_scaffold_96262_4
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2816..3220)
DNA (405bp) protein (135aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
Ribonuclease VapC n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PTF5_RHIE6
plasmid stabilization protein
berkeley_reactor_200306_biofilm_scaffold_96262_5
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3220..3474)
DNA (255bp) protein (85aa)
Hypothetical conserved protein n=2 Tax=Rhizobium etli RepID=B3PTF6_RHIE6
hypothetical protein
Hypothetical conserved protein {ECO:0000313|EMBL:ACE90216.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
berkeley_reactor_200306_biofilm_scaffold_96262_6
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3550..5379)
DNA (1830bp) protein (610aa)
GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A3F0_STAND
Fis family GAF modulated sigma-54 specific transcriptional regulator
GAF modulated sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:ADH89709.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_96262_7
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5731..7251
DNA (1521bp) protein (507aa)
aldehyde dehydrogenase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B39319
Aldehyde dehydrogenase {ECO:0000313|EMBL:KJC52672.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
aldehyde dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_96262_8
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7557..7937
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BTD1_GRABC
UDP-glucose 4-epimerase {ECO:0000313|EMBL:KJC52673.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
Hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_96262_9
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7992..8774)
DNA (783bp) protein (261aa)
UPI0003CFE4A0 related cluster n=1 Tax=unknown RepID=UPI0003CFE4A0
Transcriptional regulator, luxR family {ECO:0000313|EMBL:AKI01610.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
putative LuxR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_96262_10
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8927..10270
DNA (1344bp) protein (448aa)
L-glutamine synthetase (EC:6.3.1.2)
Type-1 glutamine synthetase 2 n=1 Tax=Citreicella sp. SE45 RepID=D0DC98_9RHOB
Glutamine synthetase {ECO:0000313|EMBL:KGF70089.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
berkeley_reactor_200306_biofilm_scaffold_96262_11
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10328..11464
DNA (1137bp) protein (379aa)
Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q483K7_COLP3
Uncharacterized protein {ECO:0000313|EMBL:KGF70088.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_96262_12
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11529..12629
DNA (1101bp) protein (367aa)
ABC transporter related protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0L3_STAND
Uncharacterized protein {ECO:0000313|EMBL:KGF70087.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
spermidine/putrescine ABC transporter ATPase
berkeley_reactor_200306_biofilm_scaffold_96262_13
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12633..13511
DNA (879bp) protein (293aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Brenneria sp. EniD312 RepID=G7LNV1_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KGF70086.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
binding-protein-dependent transporter inner membrane component
berkeley_reactor_200306_biofilm_scaffold_96262_14
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13511..14341
DNA (831bp) protein (277aa)
ABC transporter, membrane spanning protein n=1 Tax=Citreicella sp. SE45 RepID=D0D4T5_9RHOB
ABC-type spermidine/putrescine transport system, permease component II {ECO:0000313|EMBL:AKI01615.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
spermidine/putrescine ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_96262_15
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14374..15543
DNA (1170bp) protein (390aa)
NAD-dependent methanol dehydrogenase n=1 Tax=Citreicella sp. SE45 RepID=D0DC99_9RHOB
Alcohol dehydrogenase {ECO:0000313|EMBL:KGF70085.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
alcohol dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_96262_16
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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15733..16263
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000368FEA6
Fe2+ high-affinity transporter {ECO:0000313|EMBL:EKM98513.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
sugar ABC transporter substrate-binding protein
berkeley_reactor_200306_biofilm_scaffold_96262_17
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16401..16757
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z6P6_AZOL4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBS86597.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
berkeley_reactor_200306_biofilm_scaffold_96262_18

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16762..17598
DNA (837bp) protein (279aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium Bio2 RepID=B2BK99_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:ABU51088.1}; TaxID=460936 species="Bacteria; environmental samples.;" source="uncultured bacterium Bio2.;"
high-affinity Fe2+/Pb2+ permease
berkeley_reactor_200306_biofilm_scaffold_96262_19
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17605..18390)
DNA (786bp) protein (262aa)
Putative transmembrane anti-sigma factor n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IDY5_XANP2
putative transmembrane anti-sigma factor
Putative transmembrane anti-sigma factor {ECO:0000313|EMBL:ABS66228.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
berkeley_reactor_200306_biofilm_scaffold_96262_20
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18387..18995)
DNA (609bp) protein (203aa)
RNA polymerase sigma factor n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IDY4_XANP2
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Displaying 20 items

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