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berkeley_reactor_200306_biofilm_scaffold_18395

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_18395_1
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(317..3403)
DNA (3087bp) protein (1029aa)
hypothetical protein n=1 Tax=Ancylobacter sp. FA202 RepID=UPI00036F7F60
ACR family transporter {ECO:0000313|EMBL:ETR75648.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
acriflavin resistance protein
berkeley_reactor_200306_biofilm_scaffold_18395_2
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3400..4479)
DNA (1080bp) protein (360aa)
RND family efflux transporter, MFP subunit n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZQ1_9RHIZ
Hemolysin secretion protein D {ECO:0000313|EMBL:ETR75649.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
putative component of multidrug efflux system
berkeley_reactor_200306_biofilm_scaffold_18395_3
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4476..5582)
DNA (1107bp) protein (369aa)
RND family efflux transporter, MFP subunit n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZQ0_9RHIZ
Acriflavin resistance protein {ECO:0000313|EMBL:ETR75650.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
HlyD family secretion protein
berkeley_reactor_200306_biofilm_scaffold_18395_4
Paenirhodobacter enshiensis, Paenirhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5691..6347
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Ancylobacter sp. FA202 RepID=UPI00036C6496
TetR family transcriptional regulator {ECO:0000313|EMBL:KFI25578.1}; TaxID=1105367 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paenirhodobacter.;" source="Paenirhodobacter enshiensis.;"
HTH-type transcriptional regulator, TetR family
berkeley_reactor_200306_biofilm_scaffold_18395_5
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6512..7522
DNA (1011bp) protein (337aa)
CRISPR-associated helicase Cas3 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISQ3_9SPHN
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ46193.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
CRISPR-associated helicase Cas3
berkeley_reactor_200306_biofilm_scaffold_18395_6
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7995..8795
DNA (801bp) protein (267aa)
DeoR faimly transcriptional regulator n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E7F6BA
GlpR protein {ECO:0000313|EMBL:BAQ45639.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
DeoR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_18395_7
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9047..9523)
DNA (477bp) protein (159aa)
Putative ABC-type ribose transport system, auxiliary component n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TG78_9BRAD
Putative ABC-type ribose transport system, auxiliary component {ECO:0000313|EMBL:CCE05466.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
ribose ABC transporter
berkeley_reactor_200306_biofilm_scaffold_18395_8
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9643..12021)
DNA (2379bp) protein (793aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DR79_BRAJP
Aldehyde dehydrogenase {ECO:0000313|EMBL:KGT80143.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_18395_9
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12267..13253)
DNA (987bp) protein (329aa)
Putative deoxyribose-phosphate aldolase (DERA) n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EU09_BRASB
Deoxyribose-phosphate aldolase {ECO:0000313|EMBL:KGT80318.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_18395_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13481..15070
DNA (1590bp) protein (530aa)
ABC transporter substrate-binding protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000364F152
ABC-type oligopeptide transport system periplasmic component {ECO:0000313|EMBL:EYR78739.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
berkeley_reactor_200306_biofilm_scaffold_18395_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15109..16032
DNA (924bp) protein (308aa)
Oligopeptide transport system permease protein OppB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C7W7_9RHIZ
Oligopeptide ABC transport system permease protein OppB {ECO:0000313|EMBL:EYR78740.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
oppB; oligopeptide transport system permease OppB
berkeley_reactor_200306_biofilm_scaffold_18395_12
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16025..17152
DNA (1128bp) protein (376aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Phyllobacterium sp. YR531 RepID=J3CBL7_9RHIZ
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:EJN02404.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
oligopeptide ABC transporter inner membrane protein
berkeley_reactor_200306_biofilm_scaffold_18395_13
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17154..18827
DNA (1674bp) protein (558aa)
ABC transporter related n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) RepID=A4WWK9_RHOS5
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ABP71773.1}; TaxID=349102 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3).;"
Displaying 13 items

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