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berkeley_reactor_200306_biofilm_scaffold_44227

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Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_44227_1
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..141
DNA (141bp) protein (47aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003645E68
L-arabinose transport system permease protein araQ {ECO:0000313|EMBL:GAJ37493.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
binding-protein-dependent transport systems inner membrane component
berkeley_reactor_200306_biofilm_scaffold_44227_2
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(160..984)
DNA (825bp) protein (275aa)
Transcriptional regulator, GntR family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A6U7_STAND
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ADH88321.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_44227_3
Actibacterium mucosum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1351..2241
DNA (891bp) protein (297aa)
UPI00039D28F2 related cluster n=1 Tax=unknown RepID=UPI00039D28F2
Hydrolase {ECO:0000313|EMBL:KAJ56245.1}; TaxID=1454373 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source="Actibacterium mucosum KCTC 23349.;"
metal-dependent hydrolase
berkeley_reactor_200306_biofilm_scaffold_44227_4
Citreicella sp. SE45, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2229..2678
DNA (450bp) protein (150aa)
Phosphonate C-P lyase system protein PhnG n=1 Tax=Citreicella sp. SE45 RepID=D0D4X3_9RHOB
Phosphonate C-P lyase system protein PhnG {ECO:0000313|EMBL:EEX15122.1}; TaxID=501479 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. SE45.;"
alkylphosphonate utilization protein PhnG
berkeley_reactor_200306_biofilm_scaffold_44227_5
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2668..3294
DNA (627bp) protein (209aa)
Phosphonate C-P lyase system protein PhnH n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3J0D4_FRASU
phosphonate C-P lyase system protein PhnH
Phosphonate C-P lyase system protein PhnH {ECO:0000313|EMBL:ADP81563.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
berkeley_reactor_200306_biofilm_scaffold_44227_6
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3276..4322
DNA (1047bp) protein (349aa)
Phosphonate metabolism protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TV05_9PROT
Phosphonate metabolism protein {ECO:0000313|EMBL:EDP63702.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
phosphonate metabolism protein
berkeley_reactor_200306_biofilm_scaffold_44227_7
Chromobacterium piscinae, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4319..5197
DNA (879bp) protein (293aa)
PhnJ protein n=1 Tax=Grimontia sp. AK16 RepID=R1IVG0_9GAMM
Carbon-phosphorus lyase {ECO:0000313|EMBL:KIA79518.1}; TaxID=686831 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium piscinae.;"
carbon-phosphorus lyase complex subunit PhnJ
berkeley_reactor_200306_biofilm_scaffold_44227_8
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5199..5987
DNA (789bp) protein (263aa)
phosphonate metabolism protein PhnK n=1 Tax=Rhizobium mongolense RepID=UPI0003B334A1
phnK; phosphonate C-P lyase system protein PhnK
ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAB54545.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
berkeley_reactor_200306_biofilm_scaffold_44227_9
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5997..6728
DNA (732bp) protein (244aa)
ABC transporter ATP-binding protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q982B5_RHILO
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAB54544.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
berkeley_reactor_200306_biofilm_scaffold_44227_10
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6790..7782)
DNA (993bp) protein (331aa)
Inner-membrane translocator (Modular protein) n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FDM3_9RHIZ
ABC-type branched-chain amino acid transport system, permease component
Inner-membrane translocator (Modular protein) {ECO:0000313|EMBL:CCV14263.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
berkeley_reactor_200306_biofilm_scaffold_44227_11
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7782..8657)
DNA (876bp) protein (292aa)
Inner-membrane translocator n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7XZK7_MESOW
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:AEH86994.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
berkeley_reactor_200306_biofilm_scaffold_44227_12
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8668..9393)
DNA (726bp) protein (242aa)
ABC-type branched-chain amino acid transport systems, ATPase component n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KIM6_MESAW
ABC-type branched-chain amino acid transport systems, ATPase component
ABC-type branched-chain amino acid transport systems, ATPase component {ECO:0000313|EMBL:AGB44836.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
berkeley_reactor_200306_biofilm_scaffold_44227_13
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9390..10127)
DNA (738bp) protein (246aa)
Leucine/isoleucine/valine transporter subunit ATP-binding component of ABC superfamily n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FD32_9RHIZ
Leucine/isoleucine/valine transporter subunit ATP-binding component of ABC superfamily {ECO:0000313|EMBL:CCV14266.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
ABC transporter
berkeley_reactor_200306_biofilm_scaffold_44227_14
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10131..11378)
DNA (1248bp) protein (416aa)
Extracellular ligand-binding receptor n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TLA5_MESCW
extracellular ligand-binding receptor
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ADV11529.1}; Flags: Precursor;; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
berkeley_reactor_200306_biofilm_scaffold_44227_15
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11549..12361
DNA (813bp) protein (271aa)
Alpha/beta hydrolase fold protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7XZL1_MESOW
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ADV11530.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
berkeley_reactor_200306_biofilm_scaffold_44227_16
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12531..13031)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI000367A334
signal peptide
Uncharacterized protein {ECO:0000313|EMBL:CAL80151.1}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
berkeley_reactor_200306_biofilm_scaffold_44227_17
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13355..15259
DNA (1905bp) protein (635aa)
proline racemase protein (EC:5.1.1.4)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000362C1E3
Proline racemase {ECO:0000313|EMBL:CDX42688.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
berkeley_reactor_200306_biofilm_scaffold_44227_18
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15310..16152
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037273C5
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:CDX23841.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
family 3 extracellular solute-binding protein
berkeley_reactor_200306_biofilm_scaffold_44227_19
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16276..16929
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037D901D
Glutamate and aspartate transporter subunit membrane component of ABC superfamily {ECO:0000313|EMBL:CDX42682.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
polar amino acid ABC transporter inner membrane subunit
berkeley_reactor_200306_biofilm_scaffold_44227_20
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16926..17741
DNA (816bp) protein (272aa)
ABC-type polar amino acid transport system, ATPase component (EC:3.6.3.21)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00035C4375
Nopaline permease ATP-binding protein P {ECO:0000313|EMBL:GAJ37782.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
berkeley_reactor_200306_biofilm_scaffold_44227_21
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17782..18690
DNA (909bp) protein (303aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|SAAS:SAAS00086421}; EC=4.3.3.7 {ECO:0000256|SAAS:SAAS00086421};; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
dihydrodipicolinate synthase protein (EC:4.3.3.7)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036889A0
berkeley_reactor_200306_biofilm_scaffold_44227_22
Streptomyces griseus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18698..19705
DNA (1008bp) protein (336aa)
4-hydroxyproline epimerase {ECO:0000313|EMBL:KIX47184.1}; EC=5.1.1.8 {ECO:0000313|EMBL:KIX47184.1};; TaxID=1911 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces griseus.;"
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000372E58F
proline racemase
berkeley_reactor_200306_biofilm_scaffold_44227_23
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19724..21202
DNA (1479bp) protein (493aa)
Aldehyde dehydrogenase {ECO:0000313|EMBL:CDX23847.1}; EC=1.2.1.3 {ECO:0000313|EMBL:CDX23847.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00035D27F4
aldehyde dehydrogenase family protein
berkeley_reactor_200306_biofilm_scaffold_44227_24
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21206..22900
DNA (1695bp) protein (565aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000379135C
putative glucose dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
berkeley_reactor_200306_biofilm_scaffold_44227_25
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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22938..24380
DNA (1443bp) protein (481aa)
Aldehyde Dehydrogenase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C924_SPHTD
aldehyde Dehydrogenase
Tax=RBG_16_Nitrospirae_64_22_curated
berkeley_reactor_200306_biofilm_scaffold_44227_26
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24561..25490
DNA (930bp) protein (310aa)
Mlr2866 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98HH5_RHILO
hypothetical protein
Mlr2866 protein {ECO:0000313|EMBL:BAB49891.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
berkeley_reactor_200306_biofilm_scaffold_44227_27
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25647..25919
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2ZWC5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EME71722.1}; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_44227_28
unknown

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comp(26001..26195)
DNA (195bp) protein (65aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_44227_29
unknown

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26448..26660
DNA (213bp) protein (71aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_44227_30
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(26683..27834)
DNA (1152bp) protein (384aa)
FMN-dependent alpha-hydroxy acid dehydrogenase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IN13_METNO
FMN-dependent alpha-hydroxy acid dehydrogenase
FMN-dependent alpha-hydroxy acid dehydrogenase {ECO:0000313|EMBL:ACL62129.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
Displaying items 1-30 of 50 in total

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