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berkeley_reactor_200306_planktonic_scaffold_32477

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_32477_1
unknown

Not on your lists

2..127
DNA (126bp) protein (42aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_32477_2
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

311..1141
DNA (831bp) protein (277aa)
MIP family channel protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DFD7_SINAD
MIP family channel protein
MIP family channel protein {ECO:0000313|EMBL:AGA27972.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_32477_3
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

1353..2756
DNA (1404bp) protein (468aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
3-isopropylmalate dehydratase large subunit n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DH33_SINAD
3-isopropylmalate dehydratase large subunit
berkeley_reactor_200306_planktonic_scaffold_32477_4
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

2855..3523
DNA (669bp) protein (223aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
3-isopropylmalate dehydratase small subunit n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGJ3_SINAD
3-isopropylmalate dehydratase small subunit
berkeley_reactor_200306_planktonic_scaffold_32477_trna_2
unknown

Not on your lists

comp(3666..3736)
DNA (71bp)
transferRNA Gln
berkeley_reactor_200306_planktonic_scaffold_32477_5
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(3748..4455)
DNA (708bp) protein (236aa)
Redox-sensing transcriptional repressor Rex n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DF13_SINAD
AT-rich DNA-binding protein
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_32477_6
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(4547..5659)
DNA (1113bp) protein (371aa)
Riboflavin biosynthesis protein RibD n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGN1_SINAD
riboflavin biosynthesis protein RibD
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_32477_7
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(5690..6727)
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DFC8_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27962.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_32477_8
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(6732..7235)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DH24_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27961.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_32477_9
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(7399..7911)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DHG9_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA28121.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_32477_10
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

8135..8434
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGI1_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27960.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_32477_11
unknown

Not on your lists

comp(8528..8983)
DNA (456bp) protein (152aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_32477_12
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(9095..9916)
DNA (822bp) protein (274aa)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|SAAS:SAAS00064156}; EC=2.3.1.129 {ECO:0000256|SAAS:SAAS00001267};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Acyl-(Acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DF09_SINAD
acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase
berkeley_reactor_200306_planktonic_scaffold_32477_13
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(10132..11178)
DNA (1047bp) protein (349aa)
Putative dehydrogenase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGM6_SINAD
dehydrogenase
Putative dehydrogenase {ECO:0000313|EMBL:AGA27958.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_32477_14
unknown

Not on your lists

11481..11885
DNA (405bp) protein (135aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_32477_15
Anabaena cylindrica, Anabaena, Nostocales, Cyanobacteria, Bacteria

Not on your lists

11882..12472
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Anabaena cylindrica (strain ATCC 27899 / PCC 7122) RepID=K9ZA76_ANACC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ56103.1}; TaxID=272123 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Anabaena.;" source="Anabaena cylindrica (strain ATCC 27899 / PCC 7122).;"
berkeley_reactor_200306_planktonic_scaffold_32477_16
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

12937..13863
DNA (927bp) protein (309aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAR4_9BACT
xylose isomerase domain-containing protein
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_32477_17
unknown

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comp(14135..14329)
DNA (195bp) protein (65aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_32477_18
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

14707..16221
DNA (1515bp) protein (505aa)
Radical SAM domain protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01NY7_SOLUE
radical SAM domain-containing protein
Radical SAM domain protein {ECO:0000313|EMBL:ABJ88633.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
berkeley_reactor_200306_planktonic_scaffold_32477_trna_1
unknown

Not on your lists

16413..16553
DNA (141bp)
transferRNA Undet
berkeley_reactor_200306_planktonic_scaffold_32477_19
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

16744..18051
DNA (1308bp) protein (436aa)
Uncharacterized protein containing a von Willebrand factor type A (VWA) domain n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DDG6_SINAD
hypothetical protein
Uncharacterized protein containing a von Willebrand factor type A (VWA) domain {ECO:0000313|EMBL:AGA26863.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_32477_20
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(18135..20072)
DNA (1938bp) protein (646aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017450A2
FG-GAP repeat protein {ECO:0000313|EMBL:EDY18367.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
FG-GAP repeat-containing protein
berkeley_reactor_200306_planktonic_scaffold_32477_21
R_Deltaproteobacteria_44_9, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20376..21290)
DNA (915bp) protein (305aa)
Dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UU69_ROSS1
dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein
Tax=RIFCSPLOWO2_02_Deltaproteobacteria_44_9_curated
berkeley_reactor_200306_planktonic_scaffold_32477_22
unknown

Not on your lists

comp(21451..23100)
DNA (1650bp) protein (550aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_32477_23
unknown

Not on your lists

comp(23084..23587)
DNA (504bp) protein (168aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_32477_24
unknown

Not on your lists

comp(23584..24354)
DNA (771bp) protein (257aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_32477_25
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24359..26182)
DNA (1824bp) protein (608aa)
Transporter {ECO:0000313|EMBL:KIC89732.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
berkeley_reactor_200306_planktonic_scaffold_32477_26
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(26193..27572)
DNA (1380bp) protein (460aa)
secretion protein HlyD family protein id=14627015 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10
secretion protein HlyD family protein
Tax=CSP1_6_Rokubacteria
berkeley_reactor_200306_planktonic_scaffold_32477_27
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

27938..29803
DNA (1866bp) protein (622aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021C1_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ84468.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
berkeley_reactor_200306_planktonic_scaffold_32477_28
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(29813..31081)
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003824A69
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
ECF subfamily RNA polymerase sigma-70 factor
Displaying items 1-30 of 47 in total

View Taxonomy