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berkeley_reactor_200306_planktonic_scaffold_88353

Search features with annotation key words

Displaying items 1-30 of 118 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_88353_1
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1746..3509)
DNA (1764bp) protein (588aa)
Uncharacterized protein n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ANR9_PELPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABK98989.1}; Flags: Precursor;; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
berkeley_reactor_200306_planktonic_scaffold_88353_2
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(4039..6222)
DNA (2184bp) protein (728aa)
Multidrug resistance efflux pump n=2 Tax=Singulisphaera acidiphila RepID=L0DPZ9_SINAD
Multidrug resistance efflux pump {ECO:0000313|EMBL:AGA30913.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
multidrug resistance efflux pump
berkeley_reactor_200306_planktonic_scaffold_88353_3
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(6379..7329)
DNA (951bp) protein (317aa)
RND family efflux transporter, MFP subunit n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DNU3_SINAD
RND family efflux transporter MFP subunit
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:AGA30912.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_88353_4
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(7544..9625)
DNA (2082bp) protein (694aa)
Membrane-fusion protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DRB4_SINAD
Membrane-fusion protein {ECO:0000313|EMBL:AGA30911.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
membrane-fusion protein
berkeley_reactor_200306_planktonic_scaffold_88353_5
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

9938..10972
DNA (1035bp) protein (345aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DPZ4_SINAD
nucleoside-diphosphate-sugar epimerase
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:AGA30908.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_88353_6
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

11369..14338
DNA (2970bp) protein (990aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DNT8_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA30907.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_88353_7
unknown

Not on your lists

14660..14992
DNA (333bp) protein (111aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_88353_8
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(15018..16868)
DNA (1851bp) protein (617aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DRB1_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA30906.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_88353_9
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(17239..18366)
DNA (1128bp) protein (376aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Transcription termination factor Rho n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DNT4_SINAD
transcription termination factor
berkeley_reactor_200306_planktonic_scaffold_88353_10
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

18987..19820
DNA (834bp) protein (278aa)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
thymidylate synthase n=1 Tax=Zavarzinella formosa RepID=UPI0003096C16
thymidylate synthase
berkeley_reactor_200306_planktonic_scaffold_88353_11
Ferrimonas balearica, Ferrimonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19835..20323
DNA (489bp) protein (163aa)
dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=550540 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Ferrimonadaceae; Ferrimonas.;" source="Ferrimonas balearica (strain DSM 9799 / CCM 4581 / PAT).;"
Dihydrofolate reductase n=1 Tax=Ferrimonas balearica (strain DSM 9799 / CCM 4581 / PAT) RepID=E1SLL4_FERBD
berkeley_reactor_200306_planktonic_scaffold_88353_12
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(20369..21349)
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DG96_SINAD
dehydrogenase
Uncharacterized protein {ECO:0000313|EMBL:AGA28297.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_88353_13
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

21505..22095
DNA (591bp) protein (197aa)
Transcriptional regulator n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DHK7_SINAD
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGA28298.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_88353_14
unknown

Not on your lists

comp(22168..22365)
DNA (198bp) protein (66aa)
MarR family transcriptional regulator n=1 Tax=Schlesneria paludicola RepID=UPI00029AA213
berkeley_reactor_200306_planktonic_scaffold_88353_15
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(22366..24810)
DNA (2445bp) protein (815aa)
Peptidase M56 BlaR1 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGU2_9BACT
Peptidase M56 BlaR1 {ECO:0000313|EMBL:EEF60863.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_88353_16
Paenibacillus odorifer, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24807..25196)
DNA (390bp) protein (130aa)
Penicillinase repressor n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CCS2_9PLAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIQ74126.1}; TaxID=189426 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus odorifer.;"
berkeley_reactor_200306_planktonic_scaffold_88353_17
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25313..25522
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EQX1_METSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK49392.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
berkeley_reactor_200306_planktonic_scaffold_88353_18
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(25713..27038)
DNA (1326bp) protein (442aa)
RNA-directed DNA polymerase id=24574720 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
RNA-directed DNA polymerase
Tax=RBG_16_Planctomycetes_64_12_curated
berkeley_reactor_200306_planktonic_scaffold_88353_19
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

27694..30546
DNA (2853bp) protein (951aa)
Serine/threonine protein kinase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DEH1_SINAD
serine/threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:AGA27056.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_88353_20
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

30740..32815
DNA (2076bp) protein (692aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
DNA/RNA helicase, superfamily I n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DRA6_SINAD
DNA/RNA helicase
berkeley_reactor_200306_planktonic_scaffold_88353_21
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

33042..33629
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D559_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA24574.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_88353_22
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

34290..35597
DNA (1308bp) protein (436aa)
hypothetical protein n=1 Tax=Paenisporosarcina sp. TG20 RepID=UPI0002E02CDC
resA_2; thiol-disulfide oxidoreductase ResA
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
berkeley_reactor_200306_planktonic_scaffold_88353_23
unknown

Not on your lists

36012..36125
DNA (114bp) protein (38aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_88353_24
Draconibacterium orientale, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

36274..37980
DNA (1707bp) protein (569aa)
arylsulfatase n=1 Tax=Marinilabilia salmonicolor RepID=UPI00029A2277
arylsulfatase
Arylsulfatase {ECO:0000313|EMBL:AHW58842.1}; TaxID=1168034 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium orientale.;"
berkeley_reactor_200306_planktonic_scaffold_88353_25
unknown

Not on your lists

comp(38036..38182)
DNA (147bp) protein (49aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_88353_26
unknown

Not on your lists

comp(38538..38702)
DNA (165bp) protein (55aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_88353_27
unknown

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39271..40020
DNA (750bp) protein (250aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_88353_28
unknown

Not on your lists

comp(40226..40576)
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Sciscionella marina RepID=UPI0003742A8B
berkeley_reactor_200306_planktonic_scaffold_88353_29
RBG_13_Planctomycetes_63_9_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(40666..41253)
DNA (588bp) protein (196aa)
Putative uncharacterized protein n=1 Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SM11_PLABD
hypothetical protein
Tax=RBG_13_Planctomycetes_63_9_curated
berkeley_reactor_200306_planktonic_scaffold_88353_30
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

41550..42992
DNA (1443bp) protein (481aa)
Cystathionine beta-synthase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQL3_SINAD
cystathionine beta-synthase
Cystathionine beta-synthase {ECO:0000313|EMBL:AGA31243.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Displaying items 1-30 of 118 in total

View Taxonomy