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berkeley_reactor_200306_planktonic_scaffold_25274

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Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_25274_1

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231..572
DNA (342bp) protein (114aa)
ltrA; group II intron reverse transcriptase/maturase (EC:2.7.7.49)
RNA-directed DNA polymerase id=24574720 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Marine sediment metagenome DNA, contig: S01H1_S31101 {ECO:0000313|EMBL:GAG37526.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
berkeley_reactor_200306_planktonic_scaffold_25274_2
unknown

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828..1031
DNA (204bp) protein (68aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_25274_3

Not on your lists

1028..1453
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002E874D9
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49389.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
putative nucleic acid-binding protein, contains PIN domain
berkeley_reactor_200306_planktonic_scaffold_25274_4

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1583..1852
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002E874D9
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49389.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
berkeley_reactor_200306_planktonic_scaffold_25274_5
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

2430..3170
DNA (741bp) protein (247aa)
DNA-directed RNA polymerase specialized sigma subunit, sigma24 n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DDW3_SINAD
DNA-directed RNA polymerase subunit sigma24
DNA-directed RNA polymerase specialized sigma subunit, sigma24 {ECO:0000313|EMBL:AGA27055.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_25274_6
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

3264..6587
DNA (3324bp) protein (1108aa)
Serine/threonine protein kinase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DEH1_SINAD
serine/threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:AGA27056.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_25274_7
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

7036..8067
DNA (1032bp) protein (344aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D7D9_SINAD
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGA24546.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_25274_8
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

8252..8707
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D6Q0_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA24545.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_25274_9
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

8898..13238
DNA (4341bp) protein (1447aa)
Putative membrane-bound dehydrogenase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DCT6_SINAD
Putative membrane-bound dehydrogenase {ECO:0000313|EMBL:AGA27057.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
membrane-bound dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_25274_10
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

13308..15353
DNA (2046bp) protein (682aa)
Enterochelin esterase-like enzyme n=2 Tax=Singulisphaera acidiphila RepID=L0DDZ8_SINAD
enterochelin esterase-like enzyme
Enterochelin esterase-like enzyme {ECO:0000313|EMBL:AGA27058.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_25274_11
RBG_13_Planctomycetes_63_9_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(15532..16989)
DNA (1458bp) protein (486aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5P1_9BACT
Neutral/alkaline non-lysosomal ceramidase
Tax=RBG_13_Planctomycetes_63_9_curated
berkeley_reactor_200306_planktonic_scaffold_25274_12
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

17625..19490
DNA (1866bp) protein (622aa)
Lysophospholipase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DG58_SINAD
lysophospholipase
Lysophospholipase {ECO:0000313|EMBL:AGA27656.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_25274_13
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(19762..20343)
DNA (582bp) protein (194aa)
PEP-CTERM putative exosortase interaction domain-containing protein n=2 Tax=Singulisphaera acidiphila RepID=L0DSF1_SINAD
exosortase interaction domain-containing protein
PEP-CTERM putative exosortase interaction domain-containing protein {ECO:0000313|EMBL:AGA31326.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_25274_14
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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20997..21305
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI0003700A64
Hydrolase {ECO:0000313|EMBL:KGM31010.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
amidohydrolase
berkeley_reactor_200306_planktonic_scaffold_25274_15
Asticcacaulis benevestitus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21373..21831
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 RepID=V4NY97_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ86737.1}; TaxID=1121022 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896.;"
amidohydrolase
berkeley_reactor_200306_planktonic_scaffold_25274_16
unknown

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comp(21909..22682)
DNA (774bp) protein (258aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_25274_17
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(22748..23839)
DNA (1092bp) protein (364aa)
Peroxiredoxin n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DMJ1_SINAD
peroxiredoxin
Peroxiredoxin {ECO:0000313|EMBL:AGA30472.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_25274_18
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(24740..25831)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R6H3_ISOPI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV62884.1}; Flags: Precursor;; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
berkeley_reactor_200306_planktonic_scaffold_25274_19
unknown

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comp(25927..26187)
DNA (261bp) protein (87aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_25274_20
R_Acidobacteria_67_21, Acidobacteria, Bacteria

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27006..27353
DNA (348bp) protein (116aa)
MarR family transcriptional regulator id=12557865 bin=CNBR_ACIDO species=Patulibacter americanus genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
MarR family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
berkeley_reactor_200306_planktonic_scaffold_25274_21
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

27421..27813
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DNZ5_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA30381.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_25274_22
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

28197..29270
DNA (1074bp) protein (358aa)
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGC1_SINAD
transcriptional regulator
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain {ECO:0000313|EMBL:AGA28327.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_25274_23
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

29270..30124
DNA (855bp) protein (285aa)
ThiJ/PfpI domain protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LLJ9_SYNFM
AraC family transcriptional regulator {ECO:0000313|EMBL:KIF24585.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
ThiJ/PfpI domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_25274_24
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

30379..30630
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002E39F65
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB18282.1}; Flags: Precursor;; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
berkeley_reactor_200306_planktonic_scaffold_25274_25
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(31022..33943)
DNA (2922bp) protein (974aa)
Tetratricopeptide repeat protein,protein kinase family protein n=2 Tax=Singulisphaera acidiphila RepID=L0DIH9_SINAD
tetratricopeptide repeat protein,protein kinase family protein
Tetratricopeptide repeat protein,protein kinase family protein {ECO:0000313|EMBL:AGA28623.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_25274_26
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(33974..34603)
DNA (630bp) protein (210aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGW7_SINAD
sigma-70 family RNA polymerase sigma factor
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGA28624.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_25274_27
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

34682..35389
DNA (708bp) protein (236aa)
Nicotinamidase-like amidase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DID8_SINAD
nicotinamidase-like amidase
Nicotinamidase-like amidase {ECO:0000313|EMBL:AGA28625.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_25274_28
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

35508..37367
DNA (1860bp) protein (620aa)
Putative TIM-barrel fold metal-dependent hydrolase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DH92_SINAD
TIM-barrel fold metal-dependent hydrolase
Putative TIM-barrel fold metal-dependent hydrolase {ECO:0000313|EMBL:AGA28627.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_25274_29
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

37352..38983
DNA (1632bp) protein (544aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DII5_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA28628.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_25274_30
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

39001..39729
DNA (729bp) protein (243aa)
Leucyl aminopeptidase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGX2_SINAD
leucyl aminopeptidase
Leucyl aminopeptidase {ECO:0000313|EMBL:AGA28629.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Displaying items 1-30 of 47 in total

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