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berkeley_reactor_200306_planktonic_scaffold_244760

Search features with annotation key words

Displaying items 1-30 of 102 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_244760_1
unknown

Not on your lists

comp(3238..3471)
DNA (234bp) protein (78aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_244760_2
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(3511..4437)
DNA (927bp) protein (309aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQI3_SINAD
DNA-binding domain-containing protein
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:AGA31193.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_244760_3
Streptomyces violaceusniger, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4563..5321
DNA (759bp) protein (253aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Streptomyces violaceusniger Tu 4113 RepID=G2NWG2_STRVO
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AEM86847.1}; TaxID=653045 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces violaceusniger Tu 4113.;"
berkeley_reactor_200306_planktonic_scaffold_244760_4
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(6044..6541)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLS2_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:EAQ82705.1}; TaxID=314230 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_244760_5

Not on your lists

comp(6832..9252)
DNA (2421bp) protein (807aa)
Na-Ca exchanger/integrin-beta4 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3F88
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49391.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_244760_6
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(9664..10797)
DNA (1134bp) protein (378aa)
Glycosyltransferase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D7Y9_SINAD
glycosyltransferase
Glycosyltransferase {ECO:0000313|EMBL:AGA24766.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_244760_7
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(10909..12087)
DNA (1179bp) protein (393aa)
Glycosyltransferase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D677_SINAD
glycosyltransferase
Glycosyltransferase {ECO:0000313|EMBL:AGA24767.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_244760_8
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(12191..12721)
DNA (531bp) protein (177aa)
hypoxanthine phosphoribosyltransferase n=1 Tax=Singulisphaera acidiphila RepID=UPI0002E0A645
hypoxanthine phosphoribosyltransferase
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:AGA24768.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_244760_9
unknown

Not on your lists

comp(13018..13695)
DNA (678bp) protein (226aa)
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_244760_10
unknown

Not on your lists

14050..14217
DNA (168bp) protein (56aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_244760_11
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

14190..14774
DNA (585bp) protein (195aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D7Z3_SINAD
sigma-70 family RNA polymerase sigma factor
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGA24771.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_244760_12
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

14833..15405
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D681_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA24772.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_244760_13
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

15402..15878
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D7G8_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA24773.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_244760_14
unknown

Not on your lists

comp(15772..16476)
DNA (705bp) protein (235aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_244760_15
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

16734..17864
DNA (1131bp) protein (377aa)
Tagatose-1,6-bisphosphate aldolase n=2 Tax=Singulisphaera acidiphila RepID=L0D5T2_SINAD
tagatose-1,6-bisphosphate aldolase
Tagatose-1,6-bisphosphate aldolase {ECO:0000313|EMBL:AGA24774.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_244760_16
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(18065..21835)
DNA (3771bp) protein (1257aa)
Uncharacterized protein n=2 Tax=Singulisphaera acidiphila RepID=L0D7D4_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA24775.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_244760_17
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(21910..22449)
DNA (540bp) protein (180aa)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D7Z8_SINAD
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family {ECO:0000313|EMBL:AGA24776.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_244760_18
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(22458..23639)
DNA (1182bp) protein (394aa)
KpsF/GutQ family protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D686_SINAD
KpsF/GutQ family protein
KpsF/GutQ family protein {ECO:0000313|EMBL:AGA24777.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_244760_19
BJP_IG2158_Zixibacteria_48_33, Zixibacteria, Bacteria

Not on your lists

comp(23787..25442)
DNA (1656bp) protein (552aa)
hypothetical protein n=1 Tax=unclassified Aminicenantes RepID=UPI0003780917
pipD; C69 family peptidase
Tax=BJP_IG2158_Zixibacteria_48_33
berkeley_reactor_200306_planktonic_scaffold_244760_20
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(25719..27089)
DNA (1371bp) protein (457aa)
streptomycin biosynthesis protein StrI n=1 Tax=Singulisphaera acidiphila RepID=UPI00024747B6
dehydrogenase
Putative dehydrogenase {ECO:0000313|EMBL:AGA30993.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_244760_21
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

27543..30005
DNA (2463bp) protein (821aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAU1_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK40350.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
berkeley_reactor_200306_planktonic_scaffold_244760_22
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

30388..30825
DNA (438bp) protein (146aa)
heat shock protein Hsp20 n=1 Tax=Schlesneria paludicola RepID=UPI00029A23FA
heat shock protein Hsp20
Heat shock protein Hsp20 {ECO:0000313|EMBL:ADV62939.1}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
berkeley_reactor_200306_planktonic_scaffold_244760_23
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

31230..31775
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZP41_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:EAQ81515.1}; TaxID=314230 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_244760_24
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

31772..32776
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZP42_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:EAQ81516.1}; TaxID=314230 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_244760_25

Not on your lists

comp(32823..33200)
DNA (378bp) protein (126aa)
Putative uncharacterized protein n=1 Tax=unidentified eubacterium SCB49 RepID=A6EN87_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKM24457.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_244760_26
unknown

Not on your lists

comp(33675..34259)
DNA (585bp) protein (195aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_244760_27
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(34299..34694)
DNA (396bp) protein (132aa)
Cupin 2 conserved barrel domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJS5_9BACT
cupin
Uncharacterized protein {ECO:0000313|EMBL:EIQ00605.1}; Flags: Precursor;; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
berkeley_reactor_200306_planktonic_scaffold_244760_28
Thalassospira sp. HJ, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34976..35203)
DNA (228bp) protein (76aa)
4-oxalocrotonate tautomerase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E406C2
4-oxalocrotonate tautomerase {ECO:0000313|EMBL:KJE35910.1}; TaxID=1616823 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira sp. HJ.;"
4-oxalocrotonate tautomerase
berkeley_reactor_200306_planktonic_scaffold_244760_29
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(35301..35576)
DNA (276bp) protein (92aa)
Alcohol dehydrogenase, zinc-binding domain protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01U90_SOLUE
alcohol dehydrogenase
Alcohol dehydrogenase, zinc-binding domain protein {ECO:0000313|EMBL:ABJ86780.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
berkeley_reactor_200306_planktonic_scaffold_244760_30
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

36120..37304
DNA (1185bp) protein (395aa)
esterase n=1 Tax=Spirosoma panaciterrae RepID=UPI0003790CAF
esterase
Putative esterase {ECO:0000313|EMBL:ADB37304.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
Displaying items 1-30 of 102 in total

View Taxonomy