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berkeley_reactor_200306_planktonic_scaffold_327501

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Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_327501_1

Not on your lists

2..262
DNA (261bp) protein (87aa)
transposase IS4 family protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C560B
Uncharacterized protein {ECO:0000313|EMBL:KKL76245.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
berkeley_reactor_200306_planktonic_scaffold_327501_2
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(331..1638)
DNA (1308bp) protein (436aa)
Uncharacterized protein n=2 Tax=Singulisphaera acidiphila RepID=L0DL86_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA30159.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_327501_3
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

1875..2696
DNA (822bp) protein (274aa)
Zn-dependent protease n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DBN0_SINAD
Zn-dependent protease
Zn-dependent protease {ECO:0000313|EMBL:AGA26260.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_327501_4
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

2687..2938
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DA51_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA26259.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_327501_5
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(3063..3680)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DAH7_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA26257.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_327501_6
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(3859..5058)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DC57_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA26256.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_327501_7
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(5128..6054)
DNA (927bp) protein (309aa)
TIGR00730 family protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DBM5_SINAD
hypothetical protein
TIGR00730 family protein {ECO:0000313|EMBL:AGA26255.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_327501_8
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

6273..7391
DNA (1119bp) protein (373aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Uroporphyrinogen decarboxylase n=2 Tax=Singulisphaera acidiphila RepID=L0DA46_SINAD
uroporphyrinogen decarboxylase
berkeley_reactor_200306_planktonic_scaffold_327501_9
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

7589..8671
DNA (1083bp) protein (361aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D919_SINAD
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGA25742.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_327501_10
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

8810..9298
DNA (489bp) protein (163aa)
RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1 n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DC52_SINAD
RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1
RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1 {ECO:0000313|EMBL:AGA26251.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_327501_11
unknown

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comp(10113..10766)
DNA (654bp) protein (218aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_327501_12
RLO_PLX_64_10, Bacteria

Not on your lists

10900..13191
DNA (2292bp) protein (764aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002E7C71D
PpiC-type peptidyl-prolyl cis-trans isomerase
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
berkeley_reactor_200306_planktonic_scaffold_327501_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

13603..14952
DNA (1350bp) protein (450aa)
Amino acid/polyamine/organocation transporter, APC superfamily n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IR20_KORVE
amino acid transporter
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
berkeley_reactor_200306_planktonic_scaffold_327501_14
Methylophaga nitratireducenticrescens, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15322..16431
DNA (1110bp) protein (370aa)
dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=754476 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM; 25689 / JAM1).;"
dTDP-glucose 4,6-dehydratase n=1 Tax=Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) RepID=I1XHQ0_METNJ
berkeley_reactor_200306_planktonic_scaffold_327501_15
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16428..17318
DNA (891bp) protein (297aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MM34_CORCM
rfbA; glucose-1-phosphate thymidylyltransferase
berkeley_reactor_200306_planktonic_scaffold_327501_16
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

17785..18507
DNA (723bp) protein (241aa)
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HMC4_9FIRM
rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase
RmlC: dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:AHY45514.1}; TaxID=42256 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
berkeley_reactor_200306_planktonic_scaffold_327501_17
unknown

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18755..19744
DNA (990bp) protein (330aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_327501_18
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

19841..20620
DNA (780bp) protein (260aa)
Glycosyltransferases involved in cell wall biogenesis n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LKL2_CHLTF
cell wall biosynthesis glycosyltransferase
Glycosyltransferases involved in cell wall biogenesis {ECO:0000313|EMBL:AEP13619.1}; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
berkeley_reactor_200306_planktonic_scaffold_327501_19
unknown

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20866..21867
DNA (1002bp) protein (334aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_327501_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22056..22931
DNA (876bp) protein (292aa)
Glycosyltransferase n=1 Tax=Nodularia spumigena CCY9414 RepID=A0ZM92_NODSP
putative methyltransferase domain-containing glycosyltransferase
Putative methyltransferase domain-containing glycosyltransferase {ECO:0000313|EMBL:AGU47956.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
berkeley_reactor_200306_planktonic_scaffold_327501_21
RBG_16_Chloroflexi_64_43_curated, Chloroflexi, Bacteria

Not on your lists

23011..25428
DNA (2418bp) protein (806aa)
Methyltransferase type 11 n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XUE3_RHIRD
methyltransferase type 11
Tax=RBG_16_Chloroflexi_64_43_curated
berkeley_reactor_200306_planktonic_scaffold_327501_22
Desulfotignum phosphitoxidans, Desulfotignum, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25627..27138
DNA (1512bp) protein (504aa)
dTDP-4-dehydrorhamnose 3,5-epimerase RfbC {ECO:0000313|EMBL:EMS80508.1}; EC=5.1.3.13 {ECO:0000313|EMBL:EMS80508.1};; TaxID=1286635 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfotignum.;" source="Desulfotignum phosphitoxidans DSM 13687.;"
dTDP-4-dehydrorhamnose 3,5-epimerase RfbC n=1 Tax=Desulfotignum phosphitoxidans DSM 13687 RepID=S0FZE7_9DELT
glycosyltransferase
berkeley_reactor_200306_planktonic_scaffold_327501_23
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

27600..27896
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D9N4_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA26104.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_327501_24
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

27957..28721
DNA (765bp) protein (255aa)
Ubiquitin-protein ligase n=2 Tax=Singulisphaera acidiphila RepID=L0DB83_SINAD
ubiquitin-protein ligase
Ubiquitin-protein ligase {ECO:0000313|EMBL:AGA26103.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_327501_25
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

28858..30102
DNA (1245bp) protein (415aa)
Dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DA31_SINAD
dinucleotide-utilizing protein
Dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis {ECO:0000313|EMBL:AGA26102.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_327501_26
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

30284..31687
DNA (1404bp) protein (468aa)
Putative metal-dependent protease of the PAD1/JAB1 superfamily n=2 Tax=Singulisphaera acidiphila RepID=L0DBR2_SINAD
metal-dependent protease of the PAD1/JAB1 superfamily
Putative metal-dependent protease of the PAD1/JAB1 superfamily {ECO:0000313|EMBL:AGA26101.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_327501_27
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

31789..33087
DNA (1299bp) protein (433aa)
Zn-dependent protease with chaperone function n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DB59_SINAD
Zn-dependent protease with chaperone function
Zn-dependent protease with chaperone function {ECO:0000313|EMBL:AGA26100.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_327501_28
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

33652..36399
DNA (2748bp) protein (916aa)
Putative RND superfamily drug exporter n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D9M9_SINAD
Putative RND superfamily drug exporter {ECO:0000313|EMBL:AGA26099.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
RND superfamily drug exporter
berkeley_reactor_200306_planktonic_scaffold_327501_29
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(36430..36999)
DNA (570bp) protein (190aa)
Translation elongation factor P/translation initiation factor 5A n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DA24_SINAD
translation elongation factor P/translation initiation factor 5A
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_327501_30
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

37217..37975
DNA (759bp) protein (253aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Ribonuclease 3 n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DBQ7_SINAD
ribonuclease III
Displaying items 1-30 of 56 in total

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