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berkeley_reactor_200306_planktonic_scaffold_105867_2

Organism: 2019_SCN_bioreactor_200211_planktonic_Planctomycetes_67_37

near complete RP 47 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: 1860..4889

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQE6_SINAD similarity UNIREF
DB: UNIREF100
  • Identity: 39.8
  • Coverage: 545.0
  • Bit_score: 328
  • Evalue 1.60e-86
sigma-70 family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 39.8
  • Coverage: 545.0
  • Bit_score: 328
  • Evalue 4.40e-87
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGA31133.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 39.8
  • Coverage: 545.0
  • Bit_score: 328
  • Evalue 2.20e-86

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Taxonomy

Singulisphaera acidiphila → Singulisphaera → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 3030
ATGGCGAACATCACGTTGGGGACCAGCTTGCGGCAGATCCACAGGCTCTTCCGCGATGGGACCGCCTCCGCGATGTCGGGCGCTCAACTCCTCGAGAGATTCCTCGCACAGGGGGACGCCGGCGCTTTCGAGAGCCTCGTCGCTCGGCACGGGCCGATGGTCCTGGCCGTCTGTCGCGCCCTCCTCAAGGACCCGCACGACGTCGAGGATGCGTTCCAGGCCACGTTCCTCGCCCTCGTGAAGAAAGGCGACGCCATCCGAGGGCACGAGGCCCTTGCGGGCTGGCTCCATCGCGTCGCGCACCACGTCGCCGTCCAGGCGAACCGCGACGCCGCGATGCGTCGCGGGCACGAGCGGGCTGCGGTCTTGCGCACAACCGGCGTCGTCGTCGCCGAGGATGTCGACACCCCACGATCTCTCCACGGGGCGCTCCACGAAGAGGTGGCACGCCTGCCGGAGAAATGCCGGCTCGCGATCGTCCACTGCTACCTCGAGGGCAAGACCCACGCCCAGGCCGCCGCCGAGCTCCGATGGGGCGAGGCCACCGTCCGCAGGAGGCTCGCCGACGCCCGAGAGCTGCTCCGCTCCCGACTCACCAGCCGGGGCCTCGCCCCGGCCCTCGCCGCCCTGACCGCCTCCAGGATCCACGACGCCTCCGCCGCCATCCCGGAGCTTTGGCTCCGATCGACCGTCAAGGCCGCCGTCGCGATGGCCGCGACCCGCGGGGCCGCCACGGGAGTCGCCGCGGCACTCGCCGAAGCGGCCCTCAGCGGCATGGCGACCGCCCGCGTCACCTTGGCCGCGATGGCGACTCTGGCCCTGGGCGTGACCGCGACGATGGGCACGGGCCTCGTCGCCGCGCTCGCCGGGGACAAGCCCCCACCGGCGACAGTCCAGCCCGCTCCAGATCAACCCAAGGGTACTCCCAAGGAGGTCCCGGCGGCGGAGTTGGCCGCCTCGCCCTCGACCGGCCGTGTGCTCGACCCGAGAGGGAAACCCGTCGCGGGGGCCGCGCTCTTCTCGACGTCCCTTTGGAGTACGAAAGGGGAGCAGGCCCCGCTCACATCCACGAGCGACGCCGATGGCCGGTTCCAAATCCTTCCCCCCGAGCCCCCGAAGGAGGAATACGCAGGCCGTGGCCGGCCGCCCCTCGTTATCGTGGCGAGGGCGCCGGGATACGGGCTCGGGATCGAAGAGGTCGGCCCTTCGGAACACCCACACGACCTCAGGCTCGTCGAAGACGAGCCGATCACCGTCCGGGTCCTCGATCTCGAGGGGCGCCCCGTCGTCGGCGCGACGATCCGGCCCGAAAGGCTCTGGTGCCCGAAGGACGGAGACCTGACCGCGCGACTCCAGGCCTTCGCCGATTCGGAACTCCCCCGACATCCCGAGCCCCCAGGGCTCACGCGACGTCTCGCGGGCGTGATCCCTCCGGCCGTCACCGGGGCCGACGGCCGCGTCCGCATCGAAGGGCTCGGGCGCGAGCGGCTCCTCACGGCGATCGTCGAGGGGCCGACGATCGAAACGTCCGAGATCACGATCATGACCCGGCAAGCCAACACGCTCCGGCGATGGGGTTTGCCCCTCAAGAATGTCTTCTTCGGACCTGTCCCCGTCCTCGCAACATTACAGGCGAGCGAACCGTCCTCCGAGATCCGAGTGACCAGCACTCTCACCGGCAAAATCACGGTTACGGGATCCGAAGATCGCCTTCGAGTCTCGAGCGACGGAATAATCCTCAATCCTGACATGCGTCCAACGGGCCCCCTGTCCCATGCACGCGAGATCCTCGGGGCAACTTCCGACGTCGTGCTGGCGCCGAGCCTGCCGATCTCGGGGACCGTGCGCGATCGATCGACCGGGACTCCCTTGGCGGGCGTCGAGGTCCGGACGAGGCGTCTTTCCTCGGCCCCCGTCGTCAAAGCCACGACCGACCGCGACGGGCGCTACCGGCTCACCGGCCTGCCGATGGATTTCGAGGTCCAGCTCTCGGCCGCCGTCACGGACGATCAGCCCTACCTCCCGGAAATCCGGTCGATCAAGCTCCGAACCGGCGAACGGCCGAGGGACGTTTCCTTCAACCTGCAACGAGGCCTCTGGATCAGCGGCCGCGCCATCGACCGCTCGACAGGACAGCCCGTCAAGGGTCAGGCGGCCTACTTTGCGTTCGCGGACAACCCTCACGCCCGGAGTGAGGATTTGCCCGAAATCCAGGACGTCGAATCCCAAGGCAAGGGCTCGACCTCGCACGACGGGTCCTTCCGCATCCTCGGACTACCCGGCCGTGGCATCGTCGCATTCCAGGCCTCCCAATGGGTTTATTCGAGGGGCCTCGGGGCAGGAAAGATCCGCGGCCTGCGACGCGACGAATCGTTCACGACATACCCCATTTGCTACATCAGGTCTTTCCACGATCTCGTCGAGATCAACCCGCCGGAAGGTATCGAGAGACAGACCCAGGACCTCGTCGTCGACCCCGGTCGGACGGTCAGGATCAAGACGGTCGACCCCGACGGGAACCCCCTCGCCGGAGTCGTCACTTGCGCGCGAGGTCCATCCCTTTGTCTCACCGGGTTGGAGCCCTCGAAGACGTCGACCCACGAGGTTCTCCACCTCGCCCCCGGCGAACCTCGGACAATCACATTTTGGCACAAGGAACGCCGCCTGGTCGCCCGCCTCGCCATCGGCGACGACTCATCCGCCCTCATCACCTTGAAGCTCCAACCGTGGGGCCGAGTGACCGGCCGAGTCATCGATCACAACGGCAAGCGGGGCAGGCGGATTTCGGTTCTCGGGCTGGATCACCCGGACTTCAAAGATGGCATCGCGTTAGCCTCGAACGGCCGCACCACATTCCCCATCGACGAAGAGGGGCGGTTCCAAGTCGAAGGTCTCATCCCCGGCACAAAATACGAGCTCCGGGAGGAGGGAGATGTCAGTTCCCACCGCCTCCTGACCAAAGACCTCTCCGTCGCACCGGGCGAGGCCCGCGATCTCGGCGATCTCACCTCGAAAGCATTCCCTCGCTGA
PROTEIN sequence
Length: 1010
MANITLGTSLRQIHRLFRDGTASAMSGAQLLERFLAQGDAGAFESLVARHGPMVLAVCRALLKDPHDVEDAFQATFLALVKKGDAIRGHEALAGWLHRVAHHVAVQANRDAAMRRGHERAAVLRTTGVVVAEDVDTPRSLHGALHEEVARLPEKCRLAIVHCYLEGKTHAQAAAELRWGEATVRRRLADARELLRSRLTSRGLAPALAALTASRIHDASAAIPELWLRSTVKAAVAMAATRGAATGVAAALAEAALSGMATARVTLAAMATLALGVTATMGTGLVAALAGDKPPPATVQPAPDQPKGTPKEVPAAELAASPSTGRVLDPRGKPVAGAALFSTSLWSTKGEQAPLTSTSDADGRFQILPPEPPKEEYAGRGRPPLVIVARAPGYGLGIEEVGPSEHPHDLRLVEDEPITVRVLDLEGRPVVGATIRPERLWCPKDGDLTARLQAFADSELPRHPEPPGLTRRLAGVIPPAVTGADGRVRIEGLGRERLLTAIVEGPTIETSEITIMTRQANTLRRWGLPLKNVFFGPVPVLATLQASEPSSEIRVTSTLTGKITVTGSEDRLRVSSDGIILNPDMRPTGPLSHAREILGATSDVVLAPSLPISGTVRDRSTGTPLAGVEVRTRRLSSAPVVKATTDRDGRYRLTGLPMDFEVQLSAAVTDDQPYLPEIRSIKLRTGERPRDVSFNLQRGLWISGRAIDRSTGQPVKGQAAYFAFADNPHARSEDLPEIQDVESQGKGSTSHDGSFRILGLPGRGIVAFQASQWVYSRGLGAGKIRGLRRDESFTTYPICYIRSFHDLVEINPPEGIERQTQDLVVDPGRTVRIKTVDPDGNPLAGVVTCARGPSLCLTGLEPSKTSTHEVLHLAPGEPRTITFWHKERRLVARLAIGDDSSALITLKLQPWGRVTGRVIDHNGKRGRRISVLGLDHPDFKDGIALASNGRTTFPIDEEGRFQVEGLIPGTKYELREEGDVSSHRLLTKDLSVAPGEARDLGDLTSKAFPR*