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berkeley_reactor_200306_planktonic_scaffold_105867

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_105867_1
Rhodopirellula baltica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

263..1522
DNA (1260bp) protein (420aa)
Regulatory protein blaR1 n=1 Tax=Rhodopirellula baltica SH28 RepID=K5DC07_RHOBT
Regulatory protein blaR1 {ECO:0000313|EMBL:EKK00354.1}; TaxID=993517 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula baltica SH28.;"
antirepressor regulating drug resistance protein
berkeley_reactor_200306_planktonic_scaffold_105867_2
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

1860..4889
DNA (3030bp) protein (1010aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQE6_SINAD
sigma-70 family RNA polymerase sigma factor
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGA31133.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_105867_3
unknown

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5067..5396
DNA (330bp) protein (110aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_105867_4
unknown

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5482..6087
DNA (606bp) protein (202aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_105867_5
unknown

Not on your lists

6271..6594
DNA (324bp) protein (108aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_105867_6
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

7060..9993
DNA (2934bp) protein (978aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DKL4_SINAD
sigma-70 family RNA polymerase sigma factor
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGA29211.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_105867_7
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

10404..13292
DNA (2889bp) protein (963aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQE6_SINAD
sigma-70 family RNA polymerase sigma factor
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGA31133.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_105867_8
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

13308..14702
DNA (1395bp) protein (465aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQL6_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA31248.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_105867_9
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

14916..16124
DNA (1209bp) protein (403aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) PF2_SINAD">RepID=L0DPF2_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA31249.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_105867_10
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(16350..17990)
DNA (1641bp) protein (547aa)
Putative pre-peptidase n=2 Tax=Singulisphaera acidiphila RepID=L0DE21_SINAD
pre-peptidase
Putative pre-peptidase {ECO:0000313|EMBL:AGA27115.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_105867_11
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(18194..19519)
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DCK8_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27114.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_105867_12
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(19572..22046)
DNA (2475bp) protein (825aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DE57_SINAD
Uncharacterized protein {ECO:0000313|EMBL:AGA27113.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_105867_13
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

23102..23335
DNA (234bp) protein (78aa)
Carbon storage regulator CsrA n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DDB1_SINAD
carbon storage regulator CsrA
Carbon storage regulator CsrA {ECO:0000313|EMBL:AGA26840.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_105867_14
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(23560..25455)
DNA (1896bp) protein (632aa)
ABC-type multidrug transport system, ATPase and permease component n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DI25_SINAD
multidrug ABC transporter ATPase/permease
ABC-type multidrug transport system, ATPase and permease component {ECO:0000313|EMBL:AGA28892.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_105867_15
unknown

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25599..26174
DNA (576bp) protein (192aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_105867_16
Lyngbya aestuarii, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(26034..30122)
DNA (4089bp) protein (1363aa)
Hemolysin-type calcium-binding repeat family protein n=1 Tax=Lyngbya aestuarii BL J RepID=U7QHZ3_9CYAN
Hemolysin-type calcium-binding repeat family protein {ECO:0000313|EMBL:ERT07589.1}; TaxID=1348334 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya aestuarii BL J.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_105867_17
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

31477..32226
DNA (750bp) protein (250aa)
Uncharacterized protein family (UPF0153) n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQK4_SINAD
hypothetical protein
Uncharacterized protein family (UPF0153) {ECO:0000313|EMBL:AGA31228.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_105867_18
unknown

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32359..32637
DNA (279bp) protein (93aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_105867_19
Rhodopirellula europaea, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

32649..33041
DNA (393bp) protein (131aa)
DNA-binding protein n=1 Tax=Rhodopirellula europaea 6C RepID=M2B6M6_9PLAN
DNA-binding protein {ECO:0000313|EMBL:EMB17874.1}; TaxID=1263867 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula europaea 6C.;"
helix-turn-helix domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_105867_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(33285..34319)
DNA (1035bp) protein (345aa)
Aldo/keto reductase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKU7_9BACT
Aldo/keto reductase {ECO:0000313|EMBL:EEF59590.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
putative aldo/keto reductase
berkeley_reactor_200306_planktonic_scaffold_105867_21
Marinithermus hydrothermalis, Marinithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(34373..34819)
DNA (447bp) protein (149aa)
Transcriptional regulator, MarR family n=1 Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NPJ2_MARHT
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:AEB12493.1}; TaxID=869210 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Marinithermus.;" source="Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1).;"
berkeley_reactor_200306_planktonic_scaffold_105867_22
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35100..35918
DNA (819bp) protein (273aa)
Arylamine N-acetyltransferase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D759_SINAD
arylamine N-acetyltransferase
Arylamine N-acetyltransferase {ECO:0000313|EMBL:BAO29010.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
berkeley_reactor_200306_planktonic_scaffold_105867_23
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

36071..36283
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D761_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA24710.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_105867_24
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

36415..38835
DNA (2421bp) protein (807aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGG0_SINAD
sigma-70 family RNA polymerase sigma factor
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGA28464.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_105867_25
Triatoma infestans, Triatoma, Hemiptera, Neoptera, Arthropoda, Metazoa

Not on your lists

39086..39889
DNA (804bp) protein (268aa)
Ankyrin repeat protein, putative n=1 Tax=Trichomonas vaginalis RepID=A2ERS8_TRIVA
Putative ankyrin {ECO:0000313|EMBL:JAC15642.1}; Flags: Fragment;; TaxID=30076 species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Euhemiptera; Heteroptera; Panheteroptera; Cimicomorpha; Reduviidae; Triatominae; Triatoma.;" source="Triatoma infestans (Assassin bug).;"
Ankyrin
berkeley_reactor_200306_planktonic_scaffold_105867_26
Strongylocentrotus purpuratus, Strongylocentrotus, Echinoida, Euechinoidea, Echinodermata, Metazoa

Not on your lists

39905..43132
DNA (3228bp) protein (1076aa)
PREDICTED: hypothetical protein LOC100641148, partial n=1 Tax=Amphimedon queenslandica RepID=UPI00021A5F0A
Uncharacterized protein {ECO:0000313|EnsemblMetazoa:SPU_001707-tr}; TaxID=7668 species="Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus.;" source="Strongylocentrotus purpuratus (Purple sea urchin).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_105867_27
Verticillium alfalfae, Verticillium, Glomerellales, Hypocreomycetidae, Ascomycota, Fungi

Not on your lists

comp(43380..43913)
DNA (534bp) protein (178aa)
Predicted protein n=1 Tax=Verticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) RepID=C9S569_VERA1
Predicted protein {ECO:0000313|EMBL:EEY14169.1}; TaxID=526221 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Glomerellales; Plectosphaerellaceae; mitosporic Plectosphaerellaceae; Verticillium.;" source="Verticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136); (Verticillium wilt of alfalfa) (Verticillium albo-atrum).;"
PGAP1 family protein
berkeley_reactor_200306_planktonic_scaffold_105867_28
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44236..44709)
DNA (474bp) protein (158aa)
Uncharacterized protein n=2 Tax=Comamonas testosteroni RepID=B7WU74_COMTE
Uncharacterized protein {ECO:0000313|EMBL:AFQ49321.1}; TaxID=1009846 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia GG4.;"
Histone H1-like nucleoprotein HC2
Displaying 28 items

View Taxonomy