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berkeley_reactor_200306_planktonic_scaffold_162563

Search features with annotation key words

Displaying items 1-30 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_162563_1
unknown

Not on your lists

comp(3..83)
DNA (81bp) protein (27aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_162563_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

392..1315
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKZ4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59488.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
XdhC; xanthine and CO dehydrogenases maturation factor
berkeley_reactor_200306_planktonic_scaffold_162563_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

1515..2066
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XC04_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62472.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
metal dependent phosphohydrolase
berkeley_reactor_200306_planktonic_scaffold_162563_4
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

2082..2732
DNA (651bp) protein (217aa)
(2Fe-2S)-binding domain protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZT13_OPITP
2Fe-2S iron-sulfur cluster binding domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_162563_5
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

2725..4812
DNA (2088bp) protein (696aa)
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZT14_OPITP
molybdopterin binding aldehyde oxidase and xanthine dehydrogenase
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding {ECO:0000313|EMBL:ACB75803.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_162563_6
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

4809..5777
DNA (969bp) protein (323aa)
Molybdopterin dehydrogenase FAD-binding n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZT15_OPITP
molybdopterin dehydrogenase
Molybdopterin dehydrogenase FAD-binding {ECO:0000313|EMBL:ACB75804.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_162563_7
unknown

Not on your lists

5774..5983
DNA (210bp) protein (70aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_162563_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

6260..8419
DNA (2160bp) protein (720aa)
ATP-dependent DNA helicase RecQ n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSD9_9BACT
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:EEF57239.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ATP-dependent DNA helicase RecQ
berkeley_reactor_200306_planktonic_scaffold_162563_9
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(8466..10766)
DNA (2301bp) protein (767aa)
Alpha-1,2-mannosidase n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NT21_GRAMM
alpha-1,2-mannosidase
Alpha-1,2-mannosidase {ECO:0000313|EMBL:AEU37451.1}; Flags: Precursor;; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8).;"
berkeley_reactor_200306_planktonic_scaffold_162563_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

11196..11939
DNA (744bp) protein (248aa)
RDD domain containing protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGE6_9BACT
RDD domain containing protein {ECO:0000313|EMBL:EEF60997.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_162563_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

11946..12527
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGE5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60996.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_162563_12
RBG_19FT_COMBO_Nitrospirae_55_12_curated, Nitrospirae, Bacteria

Not on your lists

12534..13640
DNA (1107bp) protein (369aa)
Putative uncharacterized protein id=2545187 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_55_12_curated
berkeley_reactor_200306_planktonic_scaffold_162563_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

13637..13966
DNA (330bp) protein (110aa)
Rhomboid family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGE3_9BACT
Rhomboid family protein {ECO:0000313|EMBL:EEF60994.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
rhomboid family protein
berkeley_reactor_200306_planktonic_scaffold_162563_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

13977..15647
DNA (1671bp) protein (557aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGE2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60993.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_162563_15
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

15641..17029
DNA (1389bp) protein (463aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGE1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60992.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_162563_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

17045..18010
DNA (966bp) protein (322aa)
ATPase associated with various cellular activities AAA_3 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGE0_9BACT
ATPase associated with various cellular activities AAA_3 {ECO:0000313|EMBL:EEF60991.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ATPase
berkeley_reactor_200306_planktonic_scaffold_162563_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

18015..19358
DNA (1344bp) protein (448aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGD9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60990.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_162563_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

19355..20371
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGD8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60989.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_162563_19
GWC2_Nitrospirae_42_7_curated, Nitrospirae, Bacteria

Not on your lists

20368..21147
DNA (780bp) protein (260aa)
RDD domain containing protein id=4623570 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
RDD domain-containing protein
Tax=GWC2_Nitrospirae_42_7_curated
berkeley_reactor_200306_planktonic_scaffold_162563_20
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

21533..23323
DNA (1791bp) protein (597aa)
Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZUI6_OPITP
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
berkeley_reactor_200306_planktonic_scaffold_162563_21
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

23357..24256
DNA (900bp) protein (300aa)
Pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZUI8_OPITP
pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
berkeley_reactor_200306_planktonic_scaffold_162563_trna_1
unknown

Not on your lists

comp(24378..24458)
DNA (81bp)
transferRNA Leu
berkeley_reactor_200306_planktonic_scaffold_162563_22
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24758..27280
DNA (2523bp) protein (841aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
Phosphorylase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AGT3_AZOBR
maltodextrin phosphorylase
berkeley_reactor_200306_planktonic_scaffold_162563_23
GWC2_Planctomycetes_49_10_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

27280..28929
DNA (1650bp) protein (550aa)
Phosphoglucomutase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UCP2_9RHOB
pgm; phosphoglucomutase
Tax=GWC2_Planctomycetes_49_10_curated
berkeley_reactor_200306_planktonic_scaffold_162563_24
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29230..30330
DNA (1101bp) protein (367aa)
Uncharacterized protein n=2 Tax=Cupriavidus RepID=Q1LQV8_RALME
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
berkeley_reactor_200306_planktonic_scaffold_162563_25
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

30423..31814
DNA (1392bp) protein (464aa)
Beta-lactamase domain protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZSI7_OPITP
beta-lactamase domain-containing protein
Beta-lactamase domain protein {ECO:0000313|EMBL:ACB73844.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_162563_26
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(31838..32830)
DNA (993bp) protein (331aa)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
pdxA1; 4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEU4_9BACT
berkeley_reactor_200306_planktonic_scaffold_162563_27
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(32893..33849)
DNA (957bp) protein (319aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEU5_9BACT
surA; Parvulin-like peptidyl-prolyl isomerase
berkeley_reactor_200306_planktonic_scaffold_162563_28
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

34153..34974
DNA (822bp) protein (274aa)
Transcriptional regulator, XRE family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XM10_9BACT
Transcriptional regulator, XRE family {ECO:0000313|EMBL:EEF59138.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
gloB; Zn-dependent hydrolase, glyoxylase family
berkeley_reactor_200306_planktonic_scaffold_162563_29
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

35098..36207
DNA (1110bp) protein (370aa)
DegT/DnrJ/EryC1/StrS aminotransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPL4_9BACT
DegT/DnrJ/EryC1/StrS aminotransferase {ECO:0000313|EMBL:EEF58242.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DegT/DnrJ/EryC1/StrS aminotransferase
Displaying items 1-30 of 77 in total

View Taxonomy