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berkeley_reactor_200306_planktonic_scaffold_220416

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_220416_1
unknown

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comp(3..116)
DNA (114bp) protein (38aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_220416_2
Saccharicrinis fermentans, Saccharicrinis, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(576..1958)
DNA (1383bp) protein (461aa)
Alpha-L-fucosidase n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GSD3_9SPHI
Alpha-L-fucosidase {ECO:0000313|EMBL:GAF02174.1}; TaxID=869213 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Saccharicrinis.;" source="Saccharicrinis fermentans DSM 9555 = JCM 21142.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_220416_3
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

comp(1960..3354)
DNA (1395bp) protein (465aa)
hypothetical protein n=1 Tax=WS1 bacterium JGI 0000059-K21 RepID=UPI00038153FA
glycoside hydrolase family protein
Tax=CG_Arma_01
berkeley_reactor_200306_planktonic_scaffold_220416_4
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3604..4890
DNA (1287bp) protein (429aa)
Glycosyl hydrolase family 88 n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XZX8_PEDHD
glycoside hydrolase family protein
Glycosyl hydrolase family 88 {ECO:0000313|EMBL:ACU02673.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
berkeley_reactor_200306_planktonic_scaffold_220416_5
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

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4896..5591
DNA (696bp) protein (232aa)
Putative uncharacterized protein id=4709772 bin=GWC2_Bacteroidetes_40_22 species=Dysgonomonas gadei genus=Dysgonomonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
hypothetical protein
Tax=RBG_13_Planctomycetes_60_9_curated
berkeley_reactor_200306_planktonic_scaffold_220416_6
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

5588..6826
DNA (1239bp) protein (413aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1ISF8_9BACT
Alginate lyase
Alginate lyase {ECO:0000313|EMBL:AHF90756.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_220416_7
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(7187..8863)
DNA (1677bp) protein (559aa)
Cytochrome c class I n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZWJ5_OPITP
cytochrome c class I
Cytochrome c class I {ECO:0000313|EMBL:ACB73319.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_220416_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

9115..10830
DNA (1716bp) protein (572aa)
Glycoside hydrolase, family 28 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01RD8_SOLUE
glycoside hydrolase family protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
berkeley_reactor_200306_planktonic_scaffold_220416_9
Draconibacterium sp. JN14CK-3, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10862..12601)
DNA (1740bp) protein (580aa)
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XVI2_PEDHD
Uncharacterized protein {ECO:0000313|EMBL:KJF43558.1}; TaxID=1544798 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium sp. JN14CK-3.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_220416_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(12661..14133)
DNA (1473bp) protein (491aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEN1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61745.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_220416_11
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(14218..16401)
DNA (2184bp) protein (728aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000380246A
Hypothetical protein
Tax=RBG_16_Planctomycetes_55_9_curated
berkeley_reactor_200306_planktonic_scaffold_220416_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16469..18010)
DNA (1542bp) protein (514aa)
Alpha-galactosidase {ECO:0000256|RuleBase:RU361168}; EC=3.2.1.22 {ECO:0000256|RuleBase:RU361168};; Melibiase {ECO:0000256|RuleBase:RU361168}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Alpha-galactosidase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TAB6_NIAKG
alpha-galactosidase
berkeley_reactor_200306_planktonic_scaffold_220416_13
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18114..18833)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CDZ1_DESTA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFM27782.1}; TaxID=706587 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfomonile.;" source="Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1).;"
berkeley_reactor_200306_planktonic_scaffold_220416_14
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18857..19078)
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744B5A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFM27781.1}; TaxID=706587 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfomonile.;" source="Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1).;"
berkeley_reactor_200306_planktonic_scaffold_220416_15
GWC2_Planctomycetes_45_44_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

19223..19618
DNA (396bp) protein (132aa)
DNA methylase N-4/N-6 id=4944168 bin=GWC2_Planctomycetes_45_44 species=Amycolatopsis vancoresmycina genus=Amycolatopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
DNA methyltransferase
Tax=GWC2_Planctomycetes_45_44_curated
berkeley_reactor_200306_planktonic_scaffold_220416_16
unknown

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19618..20520
DNA (903bp) protein (301aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_220416_17
unknown

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20517..20594
DNA (78bp) protein (26aa)

This feature has no annotations

Displaying 17 items

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