ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_24546_37

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 68632..72279

Top 3 Functional Annotations

Value Algorithm Source
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHG8_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 36.5
  • Coverage: 315.0
  • Bit_score: 186
  • Evalue 1.50e-43
Uncharacterized protein {ECO:0000313|EMBL:EEF60803.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 36.5
  • Coverage: 315.0
  • Bit_score: 186
  • Evalue 2.10e-43
fibronectin type III protein similarity KEGG
DB: KEGG
  • Identity: 30.0
  • Coverage: 230.0
  • Bit_score: 87
  • Evalue 2.70e-14

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 3648
ATGAAAACAATTTTAACCGTTACGTTGTCGTTCTCAACGATATTGGCCTGTTGGGGGCAGTCTGCCGGACAAAGAACGTCCGCGATCCCGGACGACACGGCCTACTCGATAGTGGAGCGCGGAGCAAATCATAACGTGTGGGAAAAGTTAAGCTACGAAATGGGGCCGGACGGAAAGGTGGTGCCGCGAATCCATCGGTATGTTGAGTTGGCTTCCGGGATGAATTACAAGGATGCCAACGGCCAATGGAAAGAATCCAGGGCTGCAATTGAGTCATATTCGGGAGGTGCGGTTGCCCGCGAAGGGCAATATCAAGTCATCTTCGCCAACAACCTGAATTCTTACGGTGCCATAGACATGCAGACACCCGATGGCAAGCGTCTTCGCAGCAATATTCTTGGGCTGATGTATCACGACAAGGCCTCCGATAAAGCGGTATTAATTGCCCAATTGAAAGATACCGAAGGTGAGCTGATTTCTTCCAATCAAGTATTGTATCCGGACGCCTTCGATGGAGTGAAGGCGGATGTGCGATACACATACAAGAAAGGCAGTTTTGAGCAGGATGTAATCCTGCGCGAGCAGCCGCCGACACCGGAATCATTCGGACTAAATTCCGATACAACTGAACTGGAAGTCATGACCGAATTCATCAATCCGCCGGAAGCCGTTGCTAACAAGGACGCCGATCCATCAAGCGAAGAAATCAGGTGGGGCAGCACACGAATTGGCCACGGCAAAGCTTTCGACTTGGGGGGAAAAGCATCAAAGGCTGCAATTGACAGGGAATACCTCAATATTCAAGGCAGACATTTTCTGTTGGAAAAGGTGCTAATACAGCAGATTGAACCGCGCTTATCCCAACTTCCATTACAATCCAGCATCCCGACAAAGTCGGCGGTATTGGTGGCAAAGAACTACATAGTGCCTGTGGCGCCGCCGAAAGCGACGGAGGAAAGGCCGATTCGGATAGCGGCATCCACACCATCCGATGCGGGCTATGTATTGGACTATGTGATGTTAAATTCGAGTCATACTAATTTTACGTTCCAAGGGGATATGGACTATTACGTGAGCGGCGAATACAGCTTGAGCGGAACAACCACAATTGAAGGTGGGACGACCATCAAATTGAGTAGCAGCGGTCAGCTTGACATTGACTCAACGGGAACCATCGACTGTGAAACACGCCCGTATCTCCCCGCGGTTTTCACTTCAAAAAATGACAATAGCATTGGCGAAACGATCAGCGGAAGCTCAGGCGTGCCTTCATTGGGTGACGTAAACTGCTTTCTTAACATCGATGCGCCAAATATTGATCTTCACGACTTGCGCTTTTGCTACAGTGCGACTGCCATCCAGCAAAATCCAATATCTGGCTCTTTGAATGTGCGAAACTGCCAGTTTGTAAAGGTGGACACAGCTGCCAGCGGATATGACCTCGGGCTTTATAATGTTTTAATCGGCCGCACATCTGGTTCAAATTCTGCCGTTATTGTTGAAGGGCCCAGCTTGATCGCCAATAACGTTACGGCTGACTATGGCGAAGCGTTCATAGAGTCCGATTATTACGGGGCGACATTGGCCTTTACCAACTGTTTGGTGACTCGCCAGCCATTAATCGCATCGGGCTATACTGCAACTGTATATACAAATTGCACCGCTTGGGTGCAAACGCCATCCGGCCCCATCTATCAGGTGGTTGGTGGGGGCAGCTATTACTTAACGAACAACTGTTCATATCGTGACGTGGGCACGACGAATCTTGATCCTAGTTTGCTTGCGGATCTTCAGGCCAAAACCACCTATCCGCCGATTGTGTATTCCAATGTCACAATCTCGGCGGCATTGACTCTGTCTCCCCAGGCCGGGCGCGATACCAATACCATGGATTTAGGCTATCATTACGACCCGCTGGATTATGTGTTCGGAGAGGTGGATCTCTATTCCAATATAACATTTACGGCGGGAACTGCCGTTGGCTGGTTTGTGATGAGTGGTTCAGCTGGATATGGAATCATGATTCATAATGGCAATACCATTTCTTTCAATGGAACTGCGACGGCAAAATGCCAGTATGCCCGGCACGACTCGGTCCAGGAAAAAGGAAATGGCAATTGGAACTTGAAAGGCTGGCTGGCCGGAATTGCCGGCACGGGTAGCGGCAGTATTTATCCCAAAGTCGTTGCCGATTTCACGGTTTGCTCCAGTTATTACGGCGCGGACAACATGTTCCGCGACTACTATTTTCCGCTGACGGTGGCCGCCAAAAACAGCGAGTTTCGCAGCGGCGGATTCGGCGGCTACAGCGCGAGCAGCATGCTCACAAATTGCTTGTTCTATCGCAGCGGAACCGGAGACAGTATAGGCAATTCTTGGTATCCGTATCCGCAGATCATTCTGGATAATTGCACGTTCTATGGAGGGCGGTTGAACCCGCAGCGTCAAAGCGGCGCCACGTGGCCGGTCAGGATTGTAAACTGCGCCTTTGATGGAACCGCGATTAGCATGACAGATTATTCGGGCGGCGATACAAACATCACGTATTGTGATTATAATGCATTTTTGCTTGGGTCAAACCGGCTGGCAGTTCTTGGGTCACACGATATCGCCAACATTGTCAGCTTCAACTGGCAGACAAATTGGTATGGTAATTTTTATCTTCCTTTTGACAGCCCATTGATAAATGCCGGCAGCACGACTGCAGATCAGTTGGGACTCTATCACTACACCACCACCGTTGATCAGATGAAGGAAGGAAATTCACAAGTGGACATCGGGTATCACCACGTCGCGGCGGGACCAAGCTCAACAGACCTGAGCGGATATTGGCCTTTGGACGAAGGTTCTGGAAACGTGGCACATGATGTTTCGGGAAATGGCAGGAATGGAACGCTCACTAATGGCCCTGCGTGGACCAGTGGCGCACTTGGGTCCGGTGCGGTTCATTTTGATGGAGTGGATGACCGGATTGATCTGAGCGGCACCACGGCAACCTATGCTTTTATACAAAACAATCTAGTGTTTACGATTGGCGCTTGGATCAAACTGGATGGCGATCGTTCCGCAAGGCAGGCAATAGTTGTTAATGGGGCCAGCAGCGCCCATAAGGGATTCGATTTTATGTGGGAAACCTACGGTTCGGGTTATGGAGACCACTCCCTGCGGCTGGCAGTTTTCAAGGGCACCTACGGAACTTCTGAACTGGACTGCCATAGCGATGATAACGCAACTATTGAAGACAATAAGTGGCATTACGTGACAGTGGTGGGCAATGGATCTTCGATTACATTCTACGTGGATGGTCAGGCCAAAACCACTACCTACTCGAGCCCGCCTCAGGGTCTTTCAACGGGATACTCGACTTATAACACATCGTTCGGAGGCTGGCAGGGGCTCCTTCCGTTCAAAGGATCGCTGGATGAAGTCTGTATATATGACCGCGCTTTGGGCCAGAGTGAGATAGAATTTCTGGCCGGTAAATCGCTTCTACTTCCGGACTTGGATGGCGATGGGATTCCGGATTACCTGGAGGACAGCAATGGGAATGGCGTTTATGACACCGGGGATTCGGGTGACTGGTTGATCAATGCCTTTAATGGCCTCGGTGCGAACAGTGGTTTGGTGACATTTACTCCTCTAAAATGA
PROTEIN sequence
Length: 1216
MKTILTVTLSFSTILACWGQSAGQRTSAIPDDTAYSIVERGANHNVWEKLSYEMGPDGKVVPRIHRYVELASGMNYKDANGQWKESRAAIESYSGGAVAREGQYQVIFANNLNSYGAIDMQTPDGKRLRSNILGLMYHDKASDKAVLIAQLKDTEGELISSNQVLYPDAFDGVKADVRYTYKKGSFEQDVILREQPPTPESFGLNSDTTELEVMTEFINPPEAVANKDADPSSEEIRWGSTRIGHGKAFDLGGKASKAAIDREYLNIQGRHFLLEKVLIQQIEPRLSQLPLQSSIPTKSAVLVAKNYIVPVAPPKATEERPIRIAASTPSDAGYVLDYVMLNSSHTNFTFQGDMDYYVSGEYSLSGTTTIEGGTTIKLSSSGQLDIDSTGTIDCETRPYLPAVFTSKNDNSIGETISGSSGVPSLGDVNCFLNIDAPNIDLHDLRFCYSATAIQQNPISGSLNVRNCQFVKVDTAASGYDLGLYNVLIGRTSGSNSAVIVEGPSLIANNVTADYGEAFIESDYYGATLAFTNCLVTRQPLIASGYTATVYTNCTAWVQTPSGPIYQVVGGGSYYLTNNCSYRDVGTTNLDPSLLADLQAKTTYPPIVYSNVTISAALTLSPQAGRDTNTMDLGYHYDPLDYVFGEVDLYSNITFTAGTAVGWFVMSGSAGYGIMIHNGNTISFNGTATAKCQYARHDSVQEKGNGNWNLKGWLAGIAGTGSGSIYPKVVADFTVCSSYYGADNMFRDYYFPLTVAAKNSEFRSGGFGGYSASSMLTNCLFYRSGTGDSIGNSWYPYPQIILDNCTFYGGRLNPQRQSGATWPVRIVNCAFDGTAISMTDYSGGDTNITYCDYNAFLLGSNRLAVLGSHDIANIVSFNWQTNWYGNFYLPFDSPLINAGSTTADQLGLYHYTTTVDQMKEGNSQVDIGYHHVAAGPSSTDLSGYWPLDEGSGNVAHDVSGNGRNGTLTNGPAWTSGALGSGAVHFDGVDDRIDLSGTTATYAFIQNNLVFTIGAWIKLDGDRSARQAIVVNGASSAHKGFDFMWETYGSGYGDHSLRLAVFKGTYGTSELDCHSDDNATIEDNKWHYVTVVGNGSSITFYVDGQAKTTTYSSPPQGLSTGYSTYNTSFGGWQGLLPFKGSLDEVCIYDRALGQSEIEFLAGKSLLLPDLDGDGIPDYLEDSNGNGVYDTGDSGDWLINAFNGLGANSGLVTFTPLK*